RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NFKB2Q00653 900 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PRKAA1Q13131 559 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PEX6Q13608 980 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 TBCCQ15814 346 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 FBXO43Q4G163 708 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PPM1JQ5JR12 505 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CFAP157Q5JU67 520 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 METTL21CQ5VZV1 264 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 LRRC66Q68CR7 880 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 TMEM215Q68D42 235 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 TRIM68Q6AZZ1 485 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PTRHD1Q6GMV3 140 aaKnown RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 FBXL19Q6PCT2 694 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 C6orf89Q6UWU4 347 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 MACC1Q6ZN28 852 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 DPPA4Q7L190 304 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CMC1Q7Z7K0 106 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 RALGPS2Q86X27 583 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 FSTL5Q8N475 847 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 TRAM1L1Q8N609 369 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 SMRP1Q8NCR6 262 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 OR6K2Q8NGY2 324 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PIWIL2Q8TC59 973 aaKnown RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 CYB5D2Q8WUJ1 264 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 RSPRY1Q96DX4 576 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 DCUN1D1Q96GG9 259 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 MSLNLQ96KJ4 702 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 VPS35Q96QK1 796 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 MYADMQ96S97 322 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 C1QTNF1Q9BXJ1 281 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ZCCHC2Q9C0B9 1178 aaKnown RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 DRC3Q9H069 523 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 ILKAPQ9H0C8 392 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 WWP1Q9H0M0 922 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 SUDS3Q9H7L9 328 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 ACTR5Q9H9F9 607 aaPredicted RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 SLC24A3Q9HC58 644 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 IL26Q9NPH9 171 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 HPS4Q9NQG7 708 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 PPM1HQ9ULR3 514 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 CRYL1Q9Y2S2 319 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 DHRS7Q9Y394 339 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 KCTD3Q9Y597 815 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 OAS3Q9Y6K5 1087 aaKnown RBP7.91□□□□□ -1.14
VPS39-213ENST00000570062 ANAPC1Q9H1A4 1944 aa7.91□□□□□ -1.14
VPS39-213ENST00000570062 NUP205Q92621 2012 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 CHD5Q8TDI0 1954 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 NYNRINQ9P2P1 1898 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 PABPN1LA6NDY0 278 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 NPIPB15A6NHN6 443 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 CCT8L1PA6NM43 557 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 C16orf96A6NNT2 1141 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 TTLL8A6PVC2 850 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 TTC34A8MYJ7 566 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 KPNA3O00505 521 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 WNT9AO14904 365 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 LINC01565O15544 149 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 PHGDHO43175 533 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 TSPAN6O43657 245 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 AP1G1O43747 822 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 SYNCRIPO60506 623 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 IPO13O94829 963 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 ALPIP09923 528 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ZNF37AP17032 561 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 FMO4P31512 558 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 OPRD1P41143 372 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 SLC6A11P48066 632 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 OCRLQ01968 901 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 PLOD1Q02809 727 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 CREB5Q02930 508 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 PTSQ03393 145 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ZBTB16Q05516 673 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 BST1Q10588 318 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ENPP2Q13822 863 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 CSHL1Q14406 222 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ZNF234Q14588 700 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 STARD3Q14849 445 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 CDKL4Q5MAI5 379 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 LDLRAP1Q5SW96 308 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 C9orf64Q5T6V5 341 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 C16orf46Q6P387 395 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 OTOAQ7RTW8 1153 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 TRPM8Q7Z2W7 1104 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ADAMTSL2Q86TH1 951 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 SERPINA9Q86WD7 417 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 C10orf107Q8IVU9 208 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 CEP97Q8IW35 865 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 NXPE1Q8N323 547 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 PHTF2Q8N3S3 785 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 OR6Y1Q8NGX8 325 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 PIP4K2CQ8TBX8 421 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 KCTD4Q8WVF5 259 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 KIAA1191Q96A73 305 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 NXNL1Q96CM4 212 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 ZNF514Q96K75 400 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 NSMCE3Q96MG7 304 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 LRRC37BQ96QE4 947 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 P2RY13Q9BPV8 354 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 P2RY12Q9H244 342 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 EPHX3Q9H6B9 360 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms