RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 USP37Q86T82 979 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 DNAJC10Q8IXB1 793 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 KIAA2013Q8IYS2 634 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 IQCKQ8N0W5 287 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLC35F6Q8N357 371 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 KIF2BQ8N4N8 673 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 MMGT1Q8N4V1 131 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ALLCQ8N6M5 410 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NIPA2Q8N8Q9 360 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SPATA5Q8NB90 893 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TMIEQ8NEW7 156 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NCOA7Q8NI08 942 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLC26A7Q8TE54 656 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NSUN6Q8TEA1 469 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 SETD7Q8WTS6 366 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 KCTD4Q8WVF5 259 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CAPSLQ8WWF8 208 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ASZ1Q8WWH4 475 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PRPF31Q8WWY3 499 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 POMGNT1Q8WZA1 660 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SHC3Q92529 594 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 RGMAQ96B86 450 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TMIGD2Q96BF3 282 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLC22A18Q96BI1 424 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TAMM41Q96BW9 452 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 GRAMD1AQ96CP6 724 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 MSANTD3Q96H12 275 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TMEM80Q96HE8 168 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 HES6Q96HZ4 224 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 BOD1Q96IK1 185 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 C7orf34Q96L11 122 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 AK8Q96MA6 479 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF578Q96N58 590 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 KLHL32Q96NJ5 620 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF317Q96PQ6 595 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 RIT2Q99578 217 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 C19orf43Q9BQ61 176 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 C17orf62Q9BQA9 187 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 BCL7BQ9BQE9 202 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FERMT1Q9BQL6 677 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TMEM79Q9BSE2 394 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 HOXD1Q9GZZ0 328 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS35-208ENST00000568612 NAPBQ9H115 298 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TOR3AQ9H497 397 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ARMC7Q9H6L4 198 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NARFLQ9H6Q4 476 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TLE6Q9H808 572 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 GORASP2Q9H8Y8 452 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 UNKLQ9H9P5 680 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 LIN28AQ9H9Z2 209 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 RAVER2Q9HCJ3 691 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 ANKEF1Q9NU02 776 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS35-208ENST00000568612 GIMAP4Q9NUV9 329 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 HPF1Q9NWY4 346 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ANKMY1Q9P2S6 941 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PI4KBQ9UBF8 816 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 DKK2Q9UBU2 259 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FBXO40Q9UH90 709 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ANGPTL2Q9UKU9 493 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PADI4Q9UM07 663 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SPATA2Q9UM82 520 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ENTPD4Q9Y227 616 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 STK38LQ9Y2H1 464 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 AFG3L2Q9Y4W6 797 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 RIPK3Q9Y572 518 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 GMPPBQ9Y5P6 360 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 MAD1L1Q9Y6D9 718 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TRPM3Q9HCF6 1732 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF518AQ6AHZ1 1483 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PREX1Q8TCU6 1659 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NAV1Q8NEY1 1877 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ANKARQ7Z5J8 1434 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FRMPD4Q14CM0 1322 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 WDR17Q8IZU2 1322 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ATP7AQ04656 1500 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 MYH1P12882 1939 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 COL4A3Q01955 1670 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 EFCAB10A6NFE3 127 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZSCAN5CA6NGD5 496 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 CCDC160A6NGH7 325 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ARGFXA6NJG6 315 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ACOD1A6NK06 481 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 A6NL46 340 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SMIM23A6NLE4 172 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 LRRC53A6NM62 1247 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZNF701M0R085 212 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 F2RL2O00254 374 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TAF4O00268 1085 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 AP3D1O14617 1153 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TNPO2O14787 897 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 KIAA0355O15063 1070 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PPM1DO15297 605 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 KCNN4O15554 427 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 MSI1O43347 362 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 RNASEH1O60930 286 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 SLC43A1O75387 559 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PSIP1O75475 530 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 TIPRLO75663 272 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms