RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 DNAJC21Q5F1R6 531 aaKnown RBP13.33□□□□□ -0.28
CLK3-218ENST00000566926 ALS2CLQ60I27 953 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 KDELC1Q6UW63 502 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 LYSMD3Q7Z3D4 306 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 TAF8Q7Z7C8 310 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 LINC00523Q86TU6 105 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 KLHDC8BQ8IXV7 354 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 GSPT2Q8IYD1 628 aaKnown RBP13.33□□□□□ -0.28
CLK3-218ENST00000566926 LRRC39Q96DD0 335 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 RIOK2Q9BVS4 552 aaKnown RBP13.33□□□□□ -0.28
CLK3-218ENST00000566926 GSDMCQ9BYG8 508 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 ABCG4Q9H172 646 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 CARS2Q9HA77 564 aaKnown RBP13.33□□□□□ -0.28
CLK3-218ENST00000566926 ETNK1Q9HBU6 452 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 TRNAU1APQ9NX07 287 aaKnown RBP13.33□□□□□ -0.28
CLK3-218ENST00000566926 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLK3-218ENST00000566926 SLC17A4Q9Y2C5 497 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 ZNF711Q9Y462 761 aa13.33□□□□□ -0.28
CLK3-218ENST00000566926 SUN1O94901 812 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 METTL18O95568 372 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 ASMTLO95671 621 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 FGF1P05230 155 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 CEACAM5P06731 702 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 PROS1P07225 676 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 PMS2P54278 862 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 DCDC1P59894 354 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 ILF3Q12906 894 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-218ENST00000566926 GPS2Q13227 327 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 SLC1A5Q15758 541 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 HENMT1Q5T8I9 393 aaKnown RBP13.32□□□□□ -0.28
CLK3-218ENST00000566926 ZDHHC20Q5W0Z9 365 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 PDPK2PQ6A1A2 396 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 RFLNAQ6ZTI6 216 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 CROCCP2Q86T23 111 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 PRUNE1Q86TP1 453 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 ARL10Q8N8L6 244 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 IPMKQ8NFU5 416 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 WDR48Q8TAF3 677 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 IFI44Q8TCB0 444 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 GATA6Q92908 595 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 MRGPRX2Q96LB1 330 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 ZSCAN5AQ9BUG6 496 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 TXLNGYQ9BZA5 131 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 CAAP1Q9H8G2 361 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 LRRC40Q9H9A6 602 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 MRPL40Q9NQ50 206 aaKnown RBP13.32□□□□□ -0.28
CLK3-218ENST00000566926 NFKBIL1Q9UBC1 381 aaPredicted RBP13.32□□□□□ -0.28
CLK3-218ENST00000566926 GULP1Q9UBP9 304 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 PADI4Q9UM07 663 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 GPR34Q9UPC5 381 aa13.32□□□□□ -0.28
CLK3-218ENST00000566926 LY6G6EA0A0G2JKS1 128 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 CPED1A4D0V7 1026 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 E7ESA3 106 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 MAP2K7O14733 419 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 AP2A1O95782 977 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 SOD1P00441 154 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 FAM153BP0C7A2 387 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 PIRTP0C851 137 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 PSMB4P28070 264 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 HMGCLP35914 325 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 GNPDA1P46926 289 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 EIF3BP55884 814 aaKnown RBP13.31□□□□□ -0.28
CLK3-218ENST00000566926 FAM153CQ494X1 144 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 SIRPB2Q5JXA9 342 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 HES3Q5TGS1 186 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 EFL1Q7Z2Z2 1120 aaKnown RBP13.31□□□□□ -0.28
CLK3-218ENST00000566926 CCNJLQ8IV13 435 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 SLC35F3Q8IY50 421 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 CNPY4Q8N129 248 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 TRAM1L1Q8N609 369 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
CLK3-218ENST00000566926 FAM46DQ8NEK8 389 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 MAPK15Q8TD08 544 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 GPBAR1Q8TDU6 330 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
CLK3-218ENST00000566926 COX14Q96I36 57 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 NAT9Q9BTE0 207 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 SPATA16Q9BXB7 569 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 FUT8Q9BYC5 575 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 TMEM168Q9H0V1 697 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 RMI1Q9H9A7 625 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 VPS18Q9P253 973 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 SUFUQ9UMX1 484 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 U3KQA8 63 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 ACACAQ13085 2346 aa13.31□□□□□ -0.28
CLK3-218ENST00000566926 C1QTNF9BB2RNN3 333 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 INPP4BO15327 924 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 OPA1O60313 960 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 SPAG6O75602 509 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 TMEM63AO94886 807 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 SLC4A1P02730 911 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 CELA2BP08218 269 aaPredicted RBP13.3□□□□□ -0.28
CLK3-218ENST00000566926 ABHD2P08910 425 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 C1QTNF9P0C862 333 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 INSM1Q01101 510 aaPredicted RBP13.3□□□□□ -0.28
CLK3-218ENST00000566926 LRP8Q14114 963 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 FAM182AQ5T1J6 154 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 GUSBP11Q6P575 273 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 LRRC8BQ6P9F7 803 aa13.3□□□□□ -0.28
CLK3-218ENST00000566926 OGFOD3Q6PK18 319 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms