RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 STX7O15400 261 aaKnown RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 YKT6O15498 198 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TTI1O43156 1089 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TNFSF14O43557 240 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 HYAL3O43820 417 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 SRP72O76094 671 aaKnown RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 PRAMEF1O95521 474 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 LDOC1O95751 146 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 TNFP01375 233 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 ADRB1P08588 477 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 HTR1BP28222 390 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 MC4RP32245 332 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 MAGEA3P43357 314 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 FNTAP49354 379 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 MAZP56270 477 aaKnown RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 SESN2P58004 480 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 ACVR1Q04771 509 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 CDH17Q12864 832 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 PTK6Q13882 451 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 SEPT6Q14141 434 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 PLA2G4EQ3MJ16 856 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 C6orf132Q5T0Z8 1188 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TSTD2Q5T7W7 516 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 RNASEH2BQ5TBB1 312 aaKnown RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 OGFOD3Q6PK18 319 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 CRTC3Q6UUV7 619 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 GSTA5Q7RTV2 222 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TMPRSS9Q7Z410 1059 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 RAB44Q7Z6P3 723 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 LDB1Q86U70 411 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 IGDCC3Q8IVU1 814 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 NAGSQ8N159 534 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 CHCHD4Q8N4Q1 142 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 FAM181AQ8N9Y4 354 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 DDHD1Q8NEL9 900 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 GPR156Q8NFN8 814 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 ZNF398Q8TD17 642 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 DTX3LQ8TDB6 740 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 SLCO2A1Q92959 643 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 COL26A1Q96A83 441 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 C16orf45Q96MC5 204 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 VPS35Q96QK1 796 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 RANBP9Q96S59 729 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 NRTNQ99748 197 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TMEM121BQ9BXQ6 578 aaPredicted RBP9.11□□□□□ -0.95
VPS35-206ENST00000565228 TRIM39Q9HCM9 518 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TREX1Q9NSU2 369 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 SMOXQ9NWM0 555 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 IL1RAPL1Q9NZN1 696 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 HACD3Q9P035 362 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 TAAR2Q9P1P5 351 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 KLK13Q9UKR3 277 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 KCNK6Q9Y257 313 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 ZFYVE26Q68DK2 2539 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ASH1LQ9NR48 2969 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 TRBV23OR9-2A0A075B6M9 112 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 A0A1W2PNU3 283 aaPredicted RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 PMS2P1A4D2B8 440 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 FAM149AA5PLN7 773 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ERI2A8K979 691 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 TPP1O14773 563 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 PSMD3O43242 534 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 GRID2O43424 1007 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SLC25A14O95258 325 aaPredicted RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 ASMTLO95671 621 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 GOT2P00505 430 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 CKMT1AP12532 417 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ACP5P13686 325 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 BRAFP15056 766 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 CKMT2P17540 419 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ACP1P24666 158 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 NFKBIAP25963 317 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ARCN1P48444 511 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 PDX1P52945 283 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 CFHR1Q03591 330 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 TMEM115Q12893 351 aaPredicted RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 NFATC2Q13469 925 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 HLTFQ14527 1009 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS35-206ENST00000565228 SUZ12Q15022 739 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 DBN1Q16643 649 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 FNBP1LQ5T0N5 605 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 CCDC70Q6NSX1 233 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 LRRC8BQ6P9F7 803 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SLC30A9Q6PML9 568 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 DHRS13Q6UX07 377 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 DET1Q7L5Y6 550 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ZNF572Q7Z3I7 529 aaPredicted RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 JAMLQ86YT9 394 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 UNC5BQ8IZJ1 945 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 LRRN4CLQ8ND94 238 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SPATA4Q8NEY3 305 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 HDAC10Q969S8 669 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 MFSD3Q96ES6 412 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SGF29Q96ES7 293 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SIGLEC10Q96LC7 697 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SERPINB12Q96P63 405 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 OR2M4Q96R27 311 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ZSCAN5AQ9BUG6 496 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 SLC13A1Q9BZW2 595 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 ASB8Q9H765 288 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms