RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ATP13A5Q4VNC0 1218 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 ZNF569Q5MCW4 686 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 AADACL2Q6P093 401 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 DTX1Q86Y01 620 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 KLHDC8BQ8IXV7 354 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 LSM14AQ8ND56 463 aaKnown RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 ACTL9Q8TC94 416 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 CCDC97Q96F63 343 aaPredicted RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 CMKLR1Q99788 373 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 OR2AG1Q9H205 316 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 TRABDQ9H4I3 376 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 BPIFA1Q9NP55 256 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 SARS2Q9NP81 518 aaKnown RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 FOXJ2Q9P0K8 574 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 SCHIP1Q9P0W5 487 aaPredicted RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 KLHL8Q9P2G9 620 aaPredicted RBP14.69□□□□□ -0.06
CLN3-213ENST00000565047 PISDQ9UG56 409 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 BSNQ9UPA5 3926 aa14.69□□□□□ -0.06
CLN3-213ENST00000565047 KALRNO60229 2985 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 ATRXP46100 2492 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 PRAMEF33A0A0G2JMD5 474 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 CCDC66A2RUB6 948 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 K7ENP7 123 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 HGSO14964 777 aaPredicted RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 PRAMEF10O60809 474 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 MTX2O75431 263 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 C1QL1O75973 258 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 THRAP10827 490 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 FGF3P11487 239 aaPredicted RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 F3P13726 295 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 UBE2IP63279 158 aaKnown RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 GPLD1P80108 840 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 OTUD4Q01804 1114 aaKnown RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 MPP3Q13368 585 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 TRA2AQ13595 282 aaKnown RBP eCLIP14.68□□□□□ -0.06
CLN3-213ENST00000565047 MAP9Q49MG5 647 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 INO80CQ6PI98 192 aaPredicted RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 RANBP10Q6VN20 620 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 ZNF761Q86XN6 746 aaPredicted RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 CCDC50Q8IVM0 306 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 RCBTB1Q8NDN9 531 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 CCDC74BQ96LY2 380 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 ANP32EQ9BTT0 268 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 OSBPL8Q9BZF1 889 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 LUC7LQ9NQ29 371 aaKnown RBP14.68□□□□□ -0.06
CLN3-213ENST00000565047 PRDM8Q9NQV8 689 aa14.68□□□□□ -0.06
CLN3-213ENST00000565047 KIR2DS5A0A0G2JLQ3 304 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 A0A0G2JNG1 304 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 F5H423 210 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 KIR2DS3K7RE56 304 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 TK2O00142 265 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 VEGFDO43915 354 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 AGTP01019 485 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 JMJD7P0C870 316 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 BRAFP15056 766 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 HLA-DPA1P20036 260 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 HHEXQ03014 270 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 VAC14Q08AM6 782 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 COL9A2Q14055 689 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 KIR2DS5Q14953 304 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 TGIF1Q15583 401 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 PHF19Q5T6S3 580 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 BROXQ5VW32 411 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 CCDC70Q6NSX1 233 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 TMEM71Q6P5X7 295 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 WDR74Q6RFH5 385 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 ARHGAP22Q7Z5H3 698 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 PHYKPLQ8IUZ5 450 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 SLC25A41Q8N5S1 370 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 BMPERQ8N8U9 685 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 TTC9Q92623 222 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 USP7Q93009 1102 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 PMEPA1Q969W9 287 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 BAG1Q99933 345 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 DPYSL5Q9BPU6 564 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 GBA3Q9H227 469 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 KCNK4Q9NYG8 393 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 ZNF624Q9P2J8 865 aaPredicted RBP14.67□□□□□ -0.06
CLN3-213ENST00000565047 PCDHGA3Q9Y5H0 932 aa14.67□□□□□ -0.06
CLN3-213ENST00000565047 OR5K4A6NMS3 321 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 AGRPO00253 132 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 DDX3YO15523 660 aaKnown RBP14.66□□□□□ -0.06
CLN3-213ENST00000565047 GPR39O43194 453 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ZW10O43264 779 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 SLC4A1P02730 911 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 RBP3P10745 1247 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ZNF7P17097 686 aaPredicted RBP14.66□□□□□ -0.06
CLN3-213ENST00000565047 XRCC1P18887 633 aaPredicted RBP14.66□□□□□ -0.06
CLN3-213ENST00000565047 MPSTP25325 297 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 RWDD2BP57060 319 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 TMEM115Q12893 351 aaPredicted RBP14.66□□□□□ -0.06
CLN3-213ENST00000565047 SRSF6Q13247 344 aaKnown RBP14.66□□□□□ -0.06
CLN3-213ENST00000565047 PTPRCAPQ14761 206 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ANKRD20A2Q5SQ80 823 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ARHGAP40Q5TG30 622 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ANKRD20A1Q5TYW2 823 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ANKRD20A3Q5VUR7 823 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 DENND5AQ6IQ26 1287 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 ABRAXAS1Q6UWZ7 409 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms