RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZDHHC12Q96GR4 267 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 COX14Q96I36 57 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 MCEEQ96PE7 176 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 PLEKHG4BQ96PX9 1271 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 SMIM14Q96QK8 99 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 MCCC1Q96RQ3 725 aaPredicted RBP7.22□□□□□ -1.25
VPS4A-203ENST00000564399 NUDCD1Q96RS6 583 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 CNPY3Q9BT09 278 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 NUDT9Q9BW91 350 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 STK33Q9BYT3 514 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 UNKQ9C0B0 810 aaKnown RBP7.22□□□□□ -1.25
VPS4A-203ENST00000564399 VPS16Q9H269 839 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 RUBCNLQ9H714 662 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 UCK1Q9HA47 277 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 KLC4Q9NSK0 619 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 SEPT11Q9NVA2 429 aaKnown RBP7.22□□□□□ -1.25
VPS4A-203ENST00000564399 GPR83Q9NYM4 423 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 NOCTQ9UK39 431 aaKnown RBP7.22□□□□□ -1.25
VPS4A-203ENST00000564399 AP4E1Q9UPM8 1137 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 ENTPD4Q9Y227 616 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 SLC30A1Q9Y6M5 507 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 DOCK10Q96BY6 2186 aa7.22□□□□□ -1.25
VPS4A-203ENST00000564399 SPENQ96T58 3664 aaKnown RBP7.21□□□□□ -1.25
VPS4A-203ENST00000564399 SSU72P8A0A1W2PR75 194 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PDZK1P1A8MUH7 402 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 GRID2O43424 1007 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 CEACAM4O75871 244 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 TMEM63AO94886 807 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PDHA1P08559 390 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 FOLR1P15328 257 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF30P17039 623 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 CHRNB2P17787 502 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 NELFEP18615 380 aaKnown RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 XRCC1P18887 633 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 LPOP22079 712 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SLC19A1P41440 591 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 CAPZBP47756 277 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PER3P56645 1201 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 RPL7AP62424 266 aaKnown RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PTSQ03393 145 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 ITKQ08881 620 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PTP4A2Q12974 167 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 KCNAB1Q14722 419 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SEPT7Q16181 437 aaKnown RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 KYNUQ16719 465 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 CA9Q16790 459 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 ZXDCQ2QGD7 858 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 HSP90AA4PQ58FG1 418 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 RFX8Q6ZV50 586 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 NLRP8Q86W28 1048 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 MCEMP1Q8IX19 187 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PGBD5Q8N414 524 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 ARFGAP1Q8N6T3 406 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 NPWQ8N729 165 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PIH1D2Q8WWB5 315 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 KLHL6Q8WZ60 621 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF599Q96NL3 588 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 FCRL4Q96PJ5 515 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 RANBP9Q96S59 729 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 TUBGCP2Q9BSJ2 902 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 MLPHQ9BV36 600 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 NAA15Q9BXJ9 866 aaKnown RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 RMI1Q9H9A7 625 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 WASH6PQ9NQA3 447 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SCHIP1Q9P0W5 487 aaPredicted RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 PCSK1NQ9UHG2 260 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SNX7Q9UNH6 387 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SIK3Q9Y2K2 1263 aa7.21□□□□□ -1.26
VPS4A-203ENST00000564399 COPG1Q9Y678 874 aaKnown RBP7.21□□□□□ -1.26
VPS4A-203ENST00000564399 SPG11Q96JI7 2443 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 EIF3CLB5ME19 914 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 PRSS44E7EML9 344 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 NUAK1O60285 661 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CPNE3O75131 537 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MTA2O94776 668 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CLDN7O95471 211 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 KLK3P07288 261 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 EBLN1P0CF75 366 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 UNGP13051 313 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MMP13P45452 471 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 STC1P52823 247 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 RRADP55042 308 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 GSCP56915 257 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ACY1Q03154 408 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 SYCP1Q15431 976 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 INSCQ1MX18 579 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 PLA2G4EQ3MJ16 856 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 TDRD12Q587J7 1177 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 RALGPS1Q5JS13 557 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MIIPQ5JXC2 388 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ERMARDQ5T6L9 678 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MARC1Q5VT66 337 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 LYPLAL1Q5VWZ2 237 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 HGSNATQ68CP4 663 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CRTC3Q6UUV7 619 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MED25Q71SY5 747 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 BPHLQ86WA6 291 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 PHF13Q86YI8 300 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 TMEM126BQ8IUX1 230 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 TTC30BQ8N4P2 665 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms