RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ROPN1BQ9BZX4 212 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TMEM245Q9H330 911 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 STN1Q9H668 368 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 XKR8Q9H6D3 395 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ROPN1Q9HAT0 212 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GNPTGQ9UJJ9 305 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SMG5Q9UPR3 1016 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 IRAK3Q9Y616 596 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 V9GYQ6 96 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ACACAQ13085 2346 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GNG14A0A1W2PPG7 69 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 EIF3HO15372 352 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 AKAP10O43572 662 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SIX3O95343 332 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ENO1P06733 434 aaKnown RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 HSPA7P48741 367 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 GPX6P59796 221 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 RAB10P61026 200 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 IRF8Q02556 426 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 USP4Q13107 963 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 NR6A1Q15406 480 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF77Q15935 545 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 HNRNPA1L2Q32P51 320 aaKnown RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SH2D4BQ5SQS7 431 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 GPRC6AQ5T6X5 926 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ACBD5Q5T8D3 534 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 KLHDC10Q6PID8 442 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 PARS2Q7L3T8 475 aaKnown RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 BHLHA9Q7RTU4 235 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 C10orf67Q8IYJ2 551 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 TEX9Q8N6V9 391 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 Q8N9G6 341 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 METTL6Q8TCB7 284 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 JADE3Q92613 823 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SKA1Q96BD8 255 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SIGLEC10Q96LC7 697 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ACE2Q9BYF1 805 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ELOVL6Q9H5J4 265 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 NOL6Q9H6R4 1146 aaKnown RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 TBC1D17Q9HA65 648 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 MRPL40Q9NQ50 206 aaKnown RBP5.4□□□□□ -1.54
VPS13C-209ENST00000560637 ZDHHC18Q9NUE0 388 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SENP1Q9P0U3 644 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SOX13Q9UN79 622 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 SIT1Q9Y3P8 196 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 TIMM22Q9Y584 194 aa5.4□□□□□ -1.54
VPS13C-209ENST00000560637 CACNA1IQ9P0X4 2223 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 FAM86C2PA6NEL3 165 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 H0Y8X5 98 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 UBXN8O00124 270 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ATP8B1O43520 1251 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 RNGTTO60942 597 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 POP7O75817 140 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF189O75820 626 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 VIPP01282 170 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 BMP1P13497 986 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 LSP1P33241 339 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 GRIA3P42263 894 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 CCNG1P51959 295 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 RAP1GDS1P52306 607 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 IL1RL1Q01638 556 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 PRKAA1Q13131 559 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 RFTN1Q14699 578 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 SF1Q15637 639 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 USP39Q53GS9 565 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 IRGCQ6NXR0 463 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 BRAT1Q6PJG6 821 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 SUSD1Q6UWL2 747 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 CYP4V2Q6ZWL3 525 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ACAD11Q709F0 780 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 USP53Q70EK8 1073 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 NLRP14Q86W24 1093 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 OR2A12Q8NGT7 310 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 LMX1AQ8TE12 382 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 HNRNPLLQ8WVV9 542 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 TACO1Q9BSH4 297 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 MKRN2Q9H000 416 aaKnown RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ZNF395Q9H8N7 513 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-209ENST00000560637 SLC24A2Q9UI40 661 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 SARDHQ9UL12 918 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 NENFQ9UMX5 172 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ANKRD12Q6UB98 2062 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 ABCA7Q8IZY2 2146 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 DOCK8Q8NF50 2099 aa5.4□□□□□ -1.55
VPS13C-209ENST00000560637 A0A0J9YYE9 177 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 PEX11AO75192 247 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 WDR47O94967 919 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 BAG2O95816 211 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 TRBC1P01850 177 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 ABCB1P08183 1280 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-209ENST00000560637 TPBGLP0DKB5 382 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 ESRRAP11474 423 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-209ENST00000560637 ALADP13716 330 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 ADRB3P13945 408 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 CYP2A7P20853 494 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 DGKAP23743 735 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 MPSTP25325 297 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 AKT2P31751 481 aa5.39□□□□□ -1.55
VPS13C-209ENST00000560637 ACSL1P33121 698 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms