RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CKMT1AP12532 417 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF8P17098 575 aaPredicted RBP12.85□□□□□ -0.35
NEDD8-208ENST00000560427 MSH3P20585 1137 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 CLCNKAP51800 687 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TMPRSS15P98073 1019 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TMEM115Q12893 351 aaPredicted RBP12.85□□□□□ -0.35
NEDD8-208ENST00000560427 MORF4L2Q15014 288 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 CCDC38Q502W7 563 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 GPRC6AQ5T6X5 926 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 ANKRD22Q5VYY1 191 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 MARK2Q7KZI7 788 aaKnown RBP12.85□□□□□ -0.35
NEDD8-208ENST00000560427 LRRTM4Q86VH4 590 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 NXPE1Q8N323 547 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 BBOF1Q8ND07 529 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 OR13J1Q8NGT2 312 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 KIF18AQ8NI77 898 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 NAT6Q93015 286 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.85□□□□□ -0.35
NEDD8-208ENST00000560427 APOLD1Q96LR9 279 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 SERPINB12Q96P63 405 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 KRT12Q99456 494 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 COPS8Q99627 209 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TIMM29Q9BSF4 260 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 KIFC1Q9BW19 673 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 OR2AG1Q9H205 316 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 GPR34Q9UPC5 381 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 GPSM3Q9Y4H4 160 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 CACNA1AO00555 2505 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 DNAH14Q0VDD8 3507 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 SPAARA0A1B0GVQ0 90 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 GIPC1O14908 333 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 KMOO15229 486 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 TTI1O43156 1089 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A9O60656 530 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 URI1O94763 535 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-208ENST00000560427 GP1BAP07359 652 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 CELA2BP08218 269 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-208ENST00000560427 FTH1P19P0C7X4 201 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 SLC2A4P14672 509 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 VCLP18206 1134 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A6P19224 532 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A1P22309 533 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A4P22310 534 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ACRV1P26436 265 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 MGAT1P26572 445 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 AKT1P31749 480 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A3P35503 534 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A5P35504 534 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ACTR1BP42025 376 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 MAGEA3P43357 314 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ACADVLP49748 655 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ACTR1AP61163 376 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 PRAMEP78395 509 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 DAB2P98082 770 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 CTBSQ01459 385 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ITIH4Q14624 930 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 NR0B2Q15466 257 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ZRANB3Q5FWF4 1079 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 AARS2Q5JTZ9 985 aaKnown RBP12.84□□□□□ -0.35
NEDD8-208ENST00000560427 LYPLAL1Q5VWZ2 237 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 IZUMO3Q5VZ72 239 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 OGFOD3Q6PK18 319 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 CERS6Q6ZMG9 384 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 CAND1Q86VP6 1230 aaKnown RBP12.84□□□□□ -0.35
NEDD8-208ENST00000560427 NRROSQ86YC3 692 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 MPP5Q8N3R9 675 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 OR6C4Q8NGE1 309 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 DCUN1D1Q96GG9 259 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 TTC1Q99614 292 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A7Q9HAW7 530 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A10Q9HAW8 530 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 UGT1A8Q9HAW9 530 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 TREX1Q9NSU2 369 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ZDHHC3Q9NYG2 299 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 TAAR2Q9P1P5 351 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 SAMD15Q9P1V8 674 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 ZNHIT2Q9UHR6 403 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 SOX13Q9UN79 622 aa12.84□□□□□ -0.35
NEDD8-208ENST00000560427 DNMT3AQ9Y6K1 912 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-208ENST00000560427 IGLV3-16A0A075B6K0 115 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 CCDC162PA2VCL2 907 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 SDR42E2A6NKP2 422 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 QSOX1O00391 747 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 GPR39O43194 453 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 MTX2O75431 263 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 RFPL3O75679 317 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 SEC31AO94979 1220 aaKnown RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 PAMP19021 973 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 KCNA4P22459 653 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 IVDP26440 423 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 FOXN2P32314 431 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 PPARGP37231 505 aaPredicted RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 BCL7AQ4VC05 210 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 KHDC1Q4VXA5 237 aaKnown RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 DNAJC21Q5F1R6 531 aaKnown RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 PACS1Q6VY07 963 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 TRAPPC5Q8IUR0 188 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 AVL9Q8NBF6 648 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 MNS1Q8NEH6 495 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 FAM46DQ8NEK8 389 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms