RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LRP4O75096 1905 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 USP34Q70CQ2 3546 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 SPTY2D1-AS1A0A0U1RR47 76 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 ZCWPW2A0A1B0GU75 182 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 FADS2P1A8MWK0 482 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 H3BMM5 538 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 K7ESM1 405 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 BANF1O75531 89 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CDK14O94921 469 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 AP2A2O94973 939 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CER1O95813 267 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 IVLP07476 585 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 GSTM1P09488 218 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 ZNF806P0C7X5 589 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CTSEP14091 401 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 VCLP18206 1134 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 ACRV1P26436 265 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 ARCN1P48444 511 aaKnown RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 ARRB1P49407 418 aaPredicted RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 ARSDP51689 593 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 PMS2P54278 862 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 NXPH1P58417 271 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 HNRNPKP61978 463 aaKnown RBP eCLIP9.14□□□□□ -0.95
LDLR-210ENST00000559340 GSTM4Q03013 218 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 PPARDQ03181 441 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 TMEM115Q12893 351 aaPredicted RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 NAB1Q13506 487 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 TRIM61Q5EBN2 209 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 GPRC6AQ5T6X5 926 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 EMBQ6PCB8 327 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 PARGQ86W56 976 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 IGDCC3Q8IVU1 814 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 RBFAQ8N0V3 343 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 SDR16C5Q8N3Y7 309 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 OR13H1Q8NG92 308 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 OR56A4Q8NGH8 313 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 AGAP2Q99490 1192 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 SLC13A1Q9BZW2 595 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CLPBQ9H078 707 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CCDC68Q9H2F9 335 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 FAM96AQ9H5X1 160 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 INTS10Q9NVR2 710 aaKnown RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 ZFATQ9P243 1243 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 TXNDC16Q9P2K2 825 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.14□□□□□ -0.95
LDLR-210ENST00000559340 RAB21Q9UL25 225 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CNOT6Q9ULM6 557 aaKnown RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 GPR34Q9UPC5 381 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 CA5BQ9Y2D0 317 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 OR1A2Q9Y585 309 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 PCDHB1Q9Y5F3 818 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 COMMD10Q9Y6G5 202 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 V9GYY5 206 aaPredicted RBP9.14□□□□□ -0.95
LDLR-210ENST00000559340 GVINP1Q7Z2Y8 2422 aa9.14□□□□□ -0.95
LDLR-210ENST00000559340 ARID1BQ8NFD5 2236 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 ATXN2Q99700 1313 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 OTOGLQ3ZCN5 2332 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 A0A087WUV0 522 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 A0A1B0GVT2 93 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 H0Y8X5 98 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CCL22O00626 93 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 GAPDHSO14556 408 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 ARHGAP33O14559 1287 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 PRMT5O14744 637 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 KPNA5O15131 536 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 KMOO15229 486 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 NUAK1O60285 661 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 SOD1P00441 154 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 WNT1P04628 370 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 OR56A5P0C7T3 313 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 ATP1B2P14415 290 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 ECHS1P30084 290 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 SSTR1P30872 391 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CTSKP43235 329 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 SRP54P61011 504 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 FASTKD3Q14CZ7 662 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 SUZ12Q15022 739 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 BRD3Q15059 726 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 KYNUQ16719 465 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 HSP90AA5PQ58FG0 334 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 PSAPL1Q6NUJ1 521 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 DOK6Q6PKX4 331 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 PACS1Q6VY07 963 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 GALNT7Q86SF2 657 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 SLC26A11Q86WA9 606 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 GALNT13Q8IUC8 556 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CILP2Q8IUL8 1156 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 HID1Q8IV36 788 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 AGGF1Q8N302 714 aaeCLIP9.13□□□□□ -0.95
LDLR-210ENST00000559340 PANX3Q96QZ0 392 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CYTH2Q99418 400 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 OR2AG1Q9H205 316 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CDC42EP4Q9H3Q1 356 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 CAPN10Q9HC96 672 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 LRRC4CQ9HCJ2 640 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 GPR27Q9NS67 375 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 IARS2Q9NSE4 1012 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 TMEM74BQ9NUR3 256 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 MOCS1Q9NZB8 636 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 NINJ2Q9NZG7 142 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms