RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ADSLP30566 484 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 RANBP1P43487 201 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 RPL5P46777 297 aaKnown RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 HSPA13P48723 471 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 SESN3P58005 492 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 PEX6Q13608 980 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 PTPRCAPQ14761 206 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 PTPRNQ16849 979 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 IZUMO2Q6UXV1 221 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 NAPRTQ6XQN6 538 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 TRIM67Q6ZTA4 783 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 TAS2R42Q7RTR8 314 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 LDB1Q86U70 411 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 KDM1BQ8NB78 822 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 TXNDC5Q8NBS9 432 aaKnown RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 KIAA1191Q96A73 305 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 ULK4Q96C45 1275 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 NMUR2Q9GZQ4 415 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 CLPBQ9H078 707 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 GDE1Q9NZC3 331 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 MSRAQ9UJ68 235 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 GNPTGQ9UJJ9 305 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 PLA2G4CQ9UP65 541 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 SLC27A6Q9Y2P4 619 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 TRBV5-4A0A0C4DH59 114 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 A8MT66 165 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 B2RBV5 119 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 NRG2O14511 850 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ZSCAN9O15535 394 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CCNT2O60583 730 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 KERAO60938 352 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PIGNO95427 931 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PRAMEF1O95521 474 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ADH5P11766 374 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 AOC1P19801 751 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 FMO4P31512 558 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ACADVLP49748 655 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 IDH3AP50213 366 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CREB5Q02930 508 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CDC16Q13042 620 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TMED1Q13445 227 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CYLC2Q14093 348 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ARL13AQ5H913 290 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TXNDC11Q6PKC3 985 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 EPGNQ6UW88 154 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 B3GNT6Q6ZMB0 384 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ISCA2Q86U28 154 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TRIM74Q86UV6 250 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TRIM73Q86UV7 250 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CCNYL1Q8N7R7 359 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF781Q8N8C0 355 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DTX3LQ8TDB6 740 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ASIC4Q96FT7 647 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PLEKHG4BQ96PX9 1271 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 HEPHQ9BQS7 1158 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 KLHL4Q9C0H6 718 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 TNKS2Q9H2K2 1166 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF395Q9H8N7 513 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 THG1LQ9NWX6 298 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DUS2Q9NX74 493 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 LMCD1Q9NZU5 365 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 KLHL42Q9P2K6 505 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ERVW-1Q9UQF0 538 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 GLYATL1P3A0A0U1RQE8 302 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DENRO43583 198 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 IDO1P14902 403 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 CTPS1P17812 591 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PRDX6P30041 224 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 HNF1BP35680 557 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DGKGP49619 791 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 STK19P49842 368 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 IL2P60568 153 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ST8SIA6P61647 398 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 HERVK_113P63132 956 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 NTHL1P78549 312 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 NFATC2Q13469 925 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 MYBPC3Q14896 1274 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 EIF4HQ15056 248 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PDGFRLQ15198 375 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DHCR24Q15392 516 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PSAPL1Q6NUJ1 521 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 GDPD4Q6W3E5 623 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 RINLQ6ZS11 566 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 FRMD7Q6ZUT3 714 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 DHDDSQ86SQ9 333 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ADIPOR2Q86V24 386 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 SPATA24Q86W54 205 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 RAVER1Q8IY67 606 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 MARVELD2Q8N4S9 558 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 BPIFB1Q8TDL5 484 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 WDR60Q8WVS4 1066 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 SMARCD2Q92925 531 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 PDLIM5Q96HC4 596 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 RPL10LQ96L21 214 aaKnown RBP12.54□□□□□ -0.4
SHMT2-229ENST00000557348 FAM161BQ96MY7 647 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 BIRC8Q96P09 236 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ERVK-6Q9BXR3 956 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ZDHHC6Q9H6R6 413 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 ALG9Q9H6U8 611 aa12.54□□□□□ -0.4
SHMT2-229ENST00000557348 COG4Q9H9E3 785 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms