RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TM9SF4Q92544 642 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 PHF21AQ96BD5 680 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 SCRN2Q96FV2 425 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 PPP1R13BQ96KQ4 1090 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 SEMA3CQ99985 751 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 RANGRFQ9HD47 186 aaPredicted RBP3.6□□□□□ -1.83
SCFD1-216ENST00000555550 UBN1Q9NPG3 1134 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.6□□□□□ -1.83
SCFD1-216ENST00000555550 COPG2Q9UBF2 871 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 JRKLQ9Y4A0 524 aa3.6□□□□□ -1.83
SCFD1-216ENST00000555550 OR5K3A6NET4 321 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 FAM90A26D6RGX4 464 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 H3BQ06 376 aaPredicted RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 TMEM178BH3BS89 294 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 KCNK5O95279 499 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 IPO7O95373 1038 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 ZNF23P17027 643 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 ICAM3P32942 547 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 CASP6P55212 293 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 PNLIPRP3Q17RR3 467 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 ZNF876PQ49A33 203 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 KRTCAP3Q53RY4 240 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 PAPD4Q6PIY7 484 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 STPG4Q8N801 248 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 KLHDC9Q8NEP7 349 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 RDM1Q8NG50 284 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 FAM76AQ8TAV0 307 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 TAS1R2Q8TE23 839 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 ARHGEF26Q96DR7 871 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 OXNAD1Q96HP4 312 aaPredicted RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 NEUROD6Q96NK8 337 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 RBM4Q9BWF3 364 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 STRA6Q9BX79 667 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 MOV10L1Q9BXT6 1211 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 PIGMQ9H3S5 423 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 BICC1Q9H694 974 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 JMJD4Q9H9V9 463 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 GTF2A1LQ9UNN4 478 aa3.59□□□□□ -1.83
SCFD1-216ENST00000555550 R3HDM2Q9Y2K5 976 aaKnown RBP3.59□□□□□ -1.83
SCFD1-216ENST00000555550 KANSL1LA0AUZ9 987 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CTAGE9A4FU28 777 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 NPIPB15A6NHN6 443 aaPredicted RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ATP2A1O14983 1001 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TGFB1I1O43294 461 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 BUD23O43709 281 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 PCDH7O60245 1069 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CIDEAO60543 219 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CTSVO60911 334 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 MLYCDO95822 493 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 AGR2O95994 175 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TUBBP07437 444 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 KRT19P08727 400 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CTAGE8P0CG41 777 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CSF2RAP15509 400 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 NR1D1P20393 614 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 UGT1A1P22309 533 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ALDH4A1P30038 563 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 PBX3P40426 434 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 PIK3CAP42336 1068 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ARCN1P48444 511 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 NR0B1P51843 470 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TUBB4BP68371 445 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 PMP22Q01453 160 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CEBPZQ03701 1054 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CSTF3Q12996 717 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 NAB2Q15742 525 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ASPRV1Q53RT3 343 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 SDCCAG8Q86SQ7 713 aaPredicted RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CTAGE4Q8IX94 777 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 DIS3L2Q8IYB7 885 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 PAF1Q8N7H5 531 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TMEM116Q8NCL8 245 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ETNPPLQ8TBG4 499 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 HM13Q8TCT9 377 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF524Q96C55 264 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 ABHD8Q96I13 439 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TBATAQ96M53 351 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 MAP7D2Q96T17 732 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 SEC62Q99442 399 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 FSD1Q9BTV5 496 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 SCPEP1Q9HB40 452 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 TRPC7Q9HCX4 862 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CWC15Q9P013 229 aaKnown RBP3.58□□□□□ -1.84
SCFD1-216ENST00000555550 CLIC4Q9Y696 253 aa3.58□□□□□ -1.84
SCFD1-216ENST00000555550 A0A0G2JLW4 131 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 FAM237BA0A1B0GVD1 139 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 SMIM1B2RUZ4 78 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 ANKRD66B4E2M5 251 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 BLOC1S5-TXNDC5H3BN57 136 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CLIC2O15247 247 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 PRKNO60260 465 aaPredicted RBP3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CACNA1FO60840 1977 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 NDUFS3O75489 264 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 NR3C1P04150 777 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 RNF224P0DH78 156 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 ATP1A3P13637 1013 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CHRNB4P30926 498 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 CCR9P51686 369 aa3.57□□□□□ -1.84
SCFD1-216ENST00000555550 ZBED6P86452 979 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms