RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 AVILO75366 819 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CDK14O94921 469 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 PRSS56P0CW18 603 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 ITGALP20701 1170 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 PSMA3P25788 255 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 MGAT1P26572 445 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 ACTR1BP42025 376 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 ACADVLP49748 655 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CDKN1CP49918 316 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 ACTR1AP61163 376 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 DR1Q01658 176 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 TMEM115Q12893 351 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 NFATC2Q13469 925 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SKIDA1Q1XH10 827 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 TSTD2Q5T7W7 516 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 LRRC8BQ6P9F7 803 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SLC30A9Q6PML9 568 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 LVRNQ6Q4G3 990 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CHST15Q7LFX5 561 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 ERMP1Q7Z2K6 904 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CAND1Q86VP6 1230 aaKnown RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 KYQ8NBH2 561 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 DDHD1Q8NEL9 900 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 PPHLN1Q8NEY8 458 aaKnown RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 OR13J1Q8NGT2 312 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 NAT14Q8WUY8 206 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SCG3Q8WXD2 468 aaKnown RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CCDC97Q96F63 343 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 KRT12Q99456 494 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 TRIM51Q9BSJ1 452 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 RMI1Q9H9A7 625 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SPATS2LQ9NUQ6 558 aaKnown RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SYBUQ9NX95 663 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 BFARQ9NZS9 450 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 TAAR2Q9P1P5 351 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 GULP1Q9UBP9 304 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CRLS1Q9UJA2 301 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 APOBEC2Q9Y235 224 aaKnown RBP13.95□□□□□ -0.18
PTCH1-226ENST00000553011 SLC30A1Q9Y6M5 507 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 CCDC162PA2VCL2 907 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 OR51F1A6NGY5 319 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 AGAP14A8MT82 685 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 B4DGG1 531 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 GOLGA8MH3BSY2 632 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 CHUKO15111 745 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 TTI1O43156 1089 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 VEGFDO43915 354 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 DKK1O94907 266 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 CKMT1AP12532 417 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 ACP5P13686 325 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 NPY2RP49146 381 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 C2orf54Q08AI8 447 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 LAMB3Q13751 1172 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 PLA2G4EQ3MJ16 856 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 ZRANB3Q5FWF4 1079 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 PCID2Q5JVF3 399 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 LDLRAP1Q5SW96 308 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 RNASEH2BQ5TBB1 312 aaKnown RBP13.94□□□□□ -0.18
PTCH1-226ENST00000553011 SNX20Q7Z614 316 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 JAMLQ86YT9 394 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 ZNF547Q8IVP9 402 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 RASGEF1AQ8N9B8 481 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 NAT8LQ8N9F0 302 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 SPATA4Q8NEY3 305 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 DPEP2Q9H4A9 486 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 CHRAC1Q9NRG0 131 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 KCNK6Q9Y257 313 aa13.94□□□□□ -0.18
PTCH1-226ENST00000553011 KIF26BQ2KJY2 2108 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 TRBV5-4A0A0C4DH59 114 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 CPED1A4D0V7 1026 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GPR89AB7ZAQ6 455 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 AP3B1O00203 1094 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 DNALI1O14645 258 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-226ENST00000553011 NOBOXO60393 691 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 RFPL3O75679 317 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 TOP3BO95985 862 aaKnown RBP13.93□□□□□ -0.18
PTCH1-226ENST00000553011 ADRB1P08588 477 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GPR89BP0CG08 455 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 MSH3P20585 1137 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 ACP1P24666 158 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 IVDP26440 423 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 AKT1P31749 480 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 CTSCP53634 463 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 MRPS25P82663 173 aaKnown RBP13.93□□□□□ -0.18
PTCH1-226ENST00000553011 SARNPP82979 210 aaKnown RBP13.93□□□□□ -0.18
PTCH1-226ENST00000553011 ACVR1Q04771 509 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 FOXC1Q12948 553 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GTF2H3Q13889 308 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 LRP8Q14114 963 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 NR0B2Q15466 257 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GUSBP11Q6P575 273 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 OGFOD3Q6PK18 319 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 NLRP9Q7RTR0 991 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 TAS2R42Q7RTR8 314 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 LRRTM4Q86VH4 590 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 TRAPPC5Q8IUR0 188 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 PPIL6Q8IXY8 311 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 PIANPQ8IYJ0 282 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 NXPE1Q8N323 547 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 MPP5Q8N3R9 675 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms