RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TCP11X1B4DZS4 312 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 CDK2AP1O14519 115 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 DAPK3O43293 454 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 SNX2O60749 519 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 SOCS5O75159 536 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 GADD45BO75293 160 aaPredicted RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 SORBS2O94875 1100 aaKnown RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 NDUFA10O95299 355 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 ANKRD34CP0C6C1 535 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 ERCC2P18074 760 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 TNFRSF8P28908 595 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 HTR7P34969 479 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 NSFP46459 744 aaKnown RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 SEPHS1P49903 392 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 RENBPP51606 427 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 PGDP52209 483 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 RPL7AP62424 266 aaKnown RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 CHAF1BQ13112 559 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 LRP8Q14114 963 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 INPP5JQ15735 1006 aaPredicted RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 ZNF468Q5VIY5 522 aaPredicted RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 CPZQ66K79 652 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 DNAJC24Q6P3W2 148 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 TRIM72Q6ZMU5 477 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 SLC9B2Q86UD5 537 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 TICAM1Q8IUC6 712 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 PLXDC1Q8IUK5 500 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 PGBD5Q8N414 524 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 LZTR1Q8N653 840 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 CT55Q8WUE5 264 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 AP2M1Q96CW1 435 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 TRIM11Q96F44 468 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 SCRN2Q96FV2 425 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 C9orf72Q96LT7 481 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 SMIM14Q96QK8 99 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 OR6C1Q96RD1 312 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 RUFY1Q96T51 708 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 GANQ9H2C0 597 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 ZNF106Q9H2Y7 1883 aaKnown RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 DHX35Q9H5Z1 703 aaKnown RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 NOD2Q9HC29 1040 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 OGFRQ9NZT2 677 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 LUZP4Q9P127 313 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 LNPEPQ9UIQ6 1025 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 PCDHGA6Q9Y5G7 932 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 ICE1Q9Y2F5 2266 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 NOTCH2Q04721 2471 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 A6NCN8 305 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 DNAJC6O75061 913 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 SPAG6O75602 509 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 C9P02748 559 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 ATP1A1P05023 1023 aaKnown RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 CALB1P05937 261 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 ACP5P13686 325 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 TYRP1P17643 537 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 POU3F2P20265 443 aaPredicted RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 NFKBIAP25963 317 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 CASP14P31944 242 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 OGDHQ02218 1023 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 ZNF235Q14590 738 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 CLEC16AQ2KHT3 1053 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 SAMD5Q5TGI4 173 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 TMCO4Q5TGY1 634 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 USP45Q70EL2 814 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 MON1BQ7L1V2 547 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 PHF13Q86YI8 300 aaPredicted RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 SRRM1Q8IYB3 904 aaKnown RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 TCTN2Q96GX1 697 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 COX14Q96I36 57 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 TGM7Q96PF1 710 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 MCCC1Q96RQ3 725 aaPredicted RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 NUDCD1Q96RS6 583 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 HERPUD2Q9BSE4 406 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 CNPY3Q9BT09 278 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 SLC25A23Q9BV35 468 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 RIOK2Q9BVS4 552 aaKnown RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 EPB41L1Q9H4G0 881 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 ACTL8Q9H568 366 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 CPNE7Q9UBL6 633 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 PADI1Q9ULC6 663 aa10.36□□□□□ -0.75
VPS29-208ENST00000550267 SPTAN1Q13813 2472 aaKnown RBP10.36□□□□□ -0.75
VPS29-208ENST00000550267 KIR2DS5A0A0G2JLQ3 304 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 A0A0G2JNG1 304 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ANKRD62A6NC57 917 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 GOLGA6L3A6NEY3 463 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 LILRA5A6NI73 299 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ARGFXA6NJG6 315 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 A6NJY4 79 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 KIR2DS3K7RE56 304 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 PGLSO95336 258 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 RECKO95980 971 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 LDLRP01130 860 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 FGF5P12034 268 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 F3P13726 295 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 SOX5P35711 763 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 GARSP41250 739 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 LEPRP48357 1165 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 KLK7P49862 253 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 CCL11P51671 97 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms