RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 NCK1P16333 377 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 ZNF182P17025 639 aaPredicted RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 RHOQP17081 205 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 CDH3P22223 829 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 CRHBPP24387 322 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 POLR2IP36954 125 aaKnown RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 STC1P52823 247 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 MLLT6P55198 1093 aaPredicted RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 DSC2Q02487 901 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 GSTM4Q03013 218 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 GRB14Q14449 540 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 TTC23Q5W5X9 447 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 FAM219BQ5XKK7 198 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 GTF2IRD2BQ6EKJ0 949 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 MSANTD2Q6P1R3 559 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 GTF2IRD2Q86UP8 949 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 ZFAND4Q86XD8 727 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 ZC3H7AQ8IWR0 971 aaKnown RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 RYBPQ8N488 228 aaPredicted RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 TTC30BQ8N4P2 665 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 SH3RF2Q8TEC5 729 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 SNX19Q92543 992 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 VPS33AQ96AX1 596 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 PABPC5Q96DU9 382 aaKnown RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 CCDC115Q96NT0 180 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 MUS81Q96NY9 551 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 RAD21L1Q9H4I0 556 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 AGO3Q9H9G7 860 aaKnown RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 PRDM5Q9NQX1 630 aaPredicted RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 CATSPERZQ9NTU4 200 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 TMEM248Q9NWD8 314 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 MPP6Q9NZW5 540 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 UXTQ9UBK9 157 aaPredicted RBP8.69□□□□□ -1.02
TDP1-204ENST00000545686 RNF112Q9ULX5 631 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 SLC45A1Q9Y2W3 748 aa8.69□□□□□ -1.02
TDP1-204ENST00000545686 LRRC14BA6NHZ5 514 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 UPK1AO00322 258 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TREHO43280 583 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 MSI1O43347 362 aaKnown RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 FOXD2O60548 495 aaPredicted RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 KATNA1O75449 491 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 EPOP01588 193 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 EEF1B2P24534 225 aaKnown RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 GRIK1P39086 918 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 YAP1P46937 504 aaKnown RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 PSEN2P49810 448 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 APLP1P51693 650 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ITKQ08881 620 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 SLC10A7Q0GE19 358 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TOP3AQ13472 1001 aaPredicted RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 PLCL1Q15111 1095 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 UPP1Q16831 310 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 FAM98BQ52LJ0 330 aaKnown RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 TIGD5Q53EQ6 642 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 FRA10AC1Q70Z53 315 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TFAP2DQ7Z6R9 452 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 C14orf80Q86SX3 495 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 DPP9Q86TI2 863 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 SPNS2Q8IVW8 549 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ZNF683Q8IZ20 524 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 C8orf59Q8N0T1 100 aaPredicted RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 SLC15A4Q8N697 577 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 MINDY2Q8NBR6 621 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ARRDC2Q8TBH0 407 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 HMCESQ96FZ2 354 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TBATAQ96M53 351 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 RNF145Q96MT1 663 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ZNF347Q96SE7 839 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 FEM1AQ9BSK4 669 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 BEGAINQ9BUH8 593 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ZYG11BQ9C0D3 744 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 NTN4Q9HB63 628 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 COMMD8Q9NX08 183 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 GIN1Q9NXP7 522 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.68□□□□□ -1.02
TDP1-204ENST00000545686 SELENONQ9NZV5 590 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TLR6Q9Y2C9 796 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 SH3BP1Q9Y3L3 701 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 MICAL3Q7RTP6 2002 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 CCDC162PA2VCL2 907 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 OR51F1A6NGY5 319 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ARNTLO00327 626 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 KPNA4O00629 521 aaPredicted RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 SOAT2O75908 522 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ANXA6P08133 673 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 HOXB6P17509 224 aaKnown RBP8.68□□□□□ -1.02
TDP1-204ENST00000545686 ELK4P28324 431 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 SHMT2P34897 504 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 PSMD7P51665 324 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 MAXP61244 160 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 UFM1P61960 85 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 RAD51Q06609 339 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 PRKG2Q13237 762 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 ZNF846Q147U1 533 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 PYCR3Q53H96 274 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 PIK3R6Q5UE93 754 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 GLYATQ6IB77 296 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 GALNT18Q6P9A2 607 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 TBPL2Q6SJ96 375 aa8.68□□□□□ -1.02
TDP1-204ENST00000545686 NCCRP1Q6ZVX7 275 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms