RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 DUX1O43812 170 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 NUAK1O60285 661 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 RAD1O60671 282 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 KRT7P08729 469 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 H2AFZP0C0S5 128 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 ACP5P13686 325 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 LIFP15018 202 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 ZNF8P17098 575 aaPredicted RBP8.37□□□□□ -1.07
USP28-215ENST00000545608 MX2P20592 715 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CA4P22748 312 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 HNRNPH3P31942 346 aaKnown RBP8.37□□□□□ -1.07
USP28-215ENST00000545608 TSPAN7P41732 249 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 PPM1FP49593 454 aaPredicted RBP8.37□□□□□ -1.07
USP28-215ENST00000545608 GDF10P55107 478 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 TPM4P67936 248 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 GALNT3Q14435 633 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 ZFYVE27Q5T4F4 411 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 H2AFVQ71UI9 128 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 LYSMD3Q7Z3D4 306 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 KDELC2Q7Z4H8 507 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 ARHGAP22Q7Z5H3 698 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CCDC116Q8IYX3 515 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CACNA2D3Q8IZS8 1091 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 IL22RA1Q8N6P7 574 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 PLD5Q8N7P1 536 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 OR10G6Q8NH81 332 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CCHCR1Q8TD31 782 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 NCSTNQ92542 709 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 COL26A1Q96A83 441 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 IQCDQ96DY2 449 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CTRCQ99895 268 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CEP41Q9BYV8 373 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 TRIM4Q9C037 500 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 CLMPQ9H6B4 373 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 PKD2L2Q9NZM6 624 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 UVRAGQ9P2Y5 699 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 ATXN10Q9UBB4 475 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 HEMK1Q9Y5R4 338 aaPredicted RBP8.37□□□□□ -1.07
USP28-215ENST00000545608 LRRD1A4D1F6 860 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 RGSL1A5PLK6 1076 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 C3orf70A6NLC5 250 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 CYSRT1A8MQ03 144 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 GOLGA6L19H0YKK7 550 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 GRID2O43424 1007 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SUV39H1O43463 412 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PIRTP0C851 137 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SFTPCP11686 197 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 F3P13726 295 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 MAN1A1P33908 653 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 MAPK9P45984 424 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 IFI35P80217 286 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 MC2RQ01718 297 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PPIDQ08752 370 aaKnown RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 MESDQ14696 234 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SLC18A3Q16572 532 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 ASTE1Q2TB18 679 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 DCAF12Q5T6F0 453 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 ALS2CLQ60I27 953 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 WDR74Q6RFH5 385 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 NPNTQ6UXI9 565 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 DNAJC14Q6Y2X3 702 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 B4GALNT4Q76KP1 1039 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 TIPARPQ7Z3E1 657 aaKnown RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 TMC3Q7Z5M5 1100 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 ADGRG6Q86SQ4 1221 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SLC9B2Q86UD5 537 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 GPR26Q8NDV2 337 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 CCDC112Q8NEF3 446 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 CTNNBL1Q8WYA6 563 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 SH3KBP1Q96B97 665 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 RTP4Q96DX8 246 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PLEKHG4BQ96PX9 1271 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 TRIB3Q96RU7 358 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 HERPUD2Q9BSE4 406 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 TBC1D10AQ9BXI6 508 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 ASPSCR1Q9BZE9 553 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 XPO4Q9C0E2 1151 aaKnown RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 BRD8Q9H0E9 1235 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 OR2AG1Q9H205 316 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 CARD9Q9H257 536 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 RMI1Q9H9A7 625 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 ZFYVE1Q9HBF4 777 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 TRIM39Q9HCM9 518 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 APMAPQ9HDC9 416 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PRDM8Q9NQV8 689 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 HAUS2Q9NVX0 235 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 GEMIN8Q9NWZ8 242 aaKnown RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 SCHIP1Q9P0W5 487 aaPredicted RBP8.36□□□□□ -1.07
USP28-215ENST00000545608 CPNE7Q9UBL6 633 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SLC23A2Q9UGH3 650 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 KLHL3Q9UH77 587 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 IL17BQ9UHF5 180 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PILRAQ9UKJ1 303 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SHOC2Q9UQ13 582 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 HEY1Q9Y5J3 304 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 SDK2Q58EX2 2172 aa8.36□□□□□ -1.07
USP28-215ENST00000545608 PIEZO2Q9H5I5 2752 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 KALRNO60229 2985 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 KIR2DS5A0A0G2JLQ3 304 aa8.35□□□□□ -1.07
USP28-215ENST00000545608 A0A0G2JNG1 304 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms