RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 EFCAB7A8K855 629 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 AKR1B15C9JRZ8 316 aaPredicted RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 KMOO15229 486 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 CAPN5O15484 640 aaPredicted RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 EML2O95834 649 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TNNT1P13805 278 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 MPSTP25325 297 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 MAPK9P45984 424 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 PRKD1Q15139 912 aaPredicted RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 TEX44Q53QW1 395 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 NPNTQ6UXI9 565 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 CEACAM20Q6UY09 585 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TMC3Q7Z5M5 1100 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 LRRTM4Q86VH4 590 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 ZNF761Q86XN6 746 aaPredicted RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 PLXDC1Q8IUK5 500 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 KIAA1143Q96AT1 154 aaPredicted RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 TADA1Q96BN2 335 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TEKT5Q96M29 485 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TIMM29Q9BSF4 260 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 FAM117AQ9C073 453 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 ZCCHC2Q9C0B9 1178 aaKnown RBP12.96□□□□□ -0.33
RTN3-212ENST00000543123 SEMA4CQ9C0C4 833 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TRABDQ9H4I3 376 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 TMEM9Q9P0T7 183 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.96□□□□□ -0.33
RTN3-212ENST00000543123 TENM4Q6N022 2769 aa12.96□□□□□ -0.34
RTN3-212ENST00000543123 ASH1LQ9NR48 2969 aaKnown RBP12.96□□□□□ -0.34
RTN3-212ENST00000543123 SPTA1P02549 2419 aa12.96□□□□□ -0.34
RTN3-212ENST00000543123 PDZK1P1A8MUH7 402 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 CHUKO15111 745 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 PMPCBO75439 489 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 PIRTP0C851 137 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 ZNF8P17098 575 aaPredicted RBP12.95□□□□□ -0.34
RTN3-212ENST00000543123 COMTP21964 271 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 UGT1A3P35503 534 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 CDKN2BP42772 138 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 HADHBP55084 474 aaKnown RBP12.95□□□□□ -0.34
RTN3-212ENST00000543123 GTF2H3Q13889 308 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 SNAP47Q5SQN1 464 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 MFSD7Q6UXD7 560 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 RBM12BQ8IXT5 1001 aaKnown RBP12.95□□□□□ -0.34
RTN3-212ENST00000543123 CACNA2D3Q8IZS8 1091 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 GPR26Q8NDV2 337 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 P3H4Q92791 437 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 EXTL1Q92935 676 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 NKD1Q969G9 470 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 TTC25Q96NG3 672 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 VPS35Q96QK1 796 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 VAT1Q99536 393 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 FERMT1Q9BQL6 677 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 EFHD1Q9BUP0 239 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 KLC4Q9NSK0 619 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.95□□□□□ -0.342e-11■■■■■ 35.5
RTN3-212ENST00000543123 HACD3Q9P035 362 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 KLHL8Q9P2G9 620 aaPredicted RBP12.95□□□□□ -0.34
RTN3-212ENST00000543123 FAM153AQ9UHL3 310 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 PCYT1BQ9Y5K3 369 aaPredicted RBP12.95□□□□□ -0.34
RTN3-212ENST00000543123 B3GALT1Q9Y5Z6 326 aa12.95□□□□□ -0.34
RTN3-212ENST00000543123 MN1Q10571 1320 aaPredicted RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 A8MU76 341 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 SLC28A2O43868 658 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 RAD1O60671 282 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 CST8O60676 142 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 CDK14O94921 469 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 MT-CYBP00156 380 aaPredicted RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 VIPP01282 170 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 EPOP01588 193 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 ANKRD34CP0C6C1 535 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 ZNF7P17097 686 aaPredicted RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 BPIP17213 487 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 XRCC1P18887 633 aaPredicted RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 PTPN3P26045 913 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 MAP4P27816 1152 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 HMGCLP35914 325 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 UBE2IP63279 158 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 MC2RQ01718 297 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 SRSF6Q13247 344 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 TAZQ16635 292 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 TFDP3Q5H9I0 405 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 ANKS6Q68DC2 871 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 CYB5D1Q6P9G0 228 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 CRTC3Q6UUV7 619 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 SPOCD1Q6ZMY3 1216 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 ARHGAP22Q7Z5H3 698 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 ADGRG6Q86SQ4 1221 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 KATNAL2Q8IYT4 538 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 BMPERQ8N8U9 685 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 SPATA22Q8NHS9 363 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 GDAP1Q8TB36 358 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 BRSK1Q8TDC3 778 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 JPH3Q8WXH2 748 aaPredicted RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 EID2BQ96D98 161 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 RBM41Q96IZ5 413 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 TRIT1Q9H3H1 467 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 ARFGAP3Q9NP61 516 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 PRDM8Q9NQV8 689 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 FBXO8Q9NRD0 319 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 POT1Q9NUX5 634 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 OCIAD1Q9NX40 245 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms