RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SHCBP1LQ9BZQ2 653 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TRIM4Q9C037 500 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 IL21Q9HBE4 155 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MID1IP1Q9NPA3 183 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MRPL17Q9NRX2 175 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 RIC8BQ9NVN3 520 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 KIAA1522Q9P206 1035 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 RIMS3Q9UJD0 308 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ADAMTS6Q9UKP5 1117 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PLXNB3Q9ULL4 1909 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PPIL1Q9Y3C6 166 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SLC30A1Q9Y6M5 507 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SUPT3HB4E1H0 165 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 SUPT3HO75486 399 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 BAIAP3O94812 1187 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ARHGEF15O94989 841 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 HSD17B1P14061 328 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 XRCC1P18887 633 aaPredicted RBP9.78□□□□□ -0.84
SS18-205ENST00000542420 EEF1DP29692 281 aaKnown RBP9.78□□□□□ -0.84
SS18-205ENST00000542420 SGSHP51688 502 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 RHDQ02161 417 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 MED21Q13503 144 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GRM2Q14416 872 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PFKFB4Q16877 469 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.78□□□□□ -0.84
SS18-205ENST00000542420 GK5Q6ZS86 529 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CCDC149Q6ZUS6 474 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 SNX20Q7Z614 316 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 RBFAQ8N0V3 343 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 MARVELD2Q8N4S9 558 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ICA1LQ8NDH6 482 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ADAMTS19Q8TE59 1207 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PIH1D2Q8WWB5 315 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CCDC124Q96CT7 223 aaKnown RBP9.78□□□□□ -0.84
SS18-205ENST00000542420 EFHD1Q9BUP0 239 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 BRINP2Q9C0B6 783 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 AKTIPQ9H8T0 292 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TNFRSF12AQ9NP84 129 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ZIM2Q9NZV7 527 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 VPS51Q9UID3 782 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 FKBPLQ9UIM3 349 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GNPTGQ9UJJ9 305 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PCTPQ9UKL6 214 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 DTNAQ9Y4J8 743 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 C15orf38-AP3S2A0A0A6YYH1 394 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TCRBV3S1A0A5B6 114 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 AQP12BA6NM10 295 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CCL22O00626 93 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 FBP2O00757 339 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GIPC1O14908 333 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 DNAJA2O60884 412 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GJB3O75712 270 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 IGSF6O95976 241 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PDHA1P08559 390 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CBSLP0DN79 551 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 RPL17P18621 184 aaKnown RBP9.78□□□□□ -0.84
SS18-205ENST00000542420 DDX6P26196 483 aaKnown RBP eCLIP9.78□□□□□ -0.84
SS18-205ENST00000542420 CBSP35520 551 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 RGS4P49798 205 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CDH18Q13634 790 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TRIP10Q15642 601 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TMEM154Q6P9G4 183 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ARPINQ7Z6K5 226 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GPSM1Q86YR5 675 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 AQP12AQ8IXF9 295 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PLPP6Q8IY26 295 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 PDPRQ8NCN5 879 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 FIBINQ8TAL6 211 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 UBTD2Q8WUN7 234 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 MRPS31Q92665 395 aaKnown RBP9.78□□□□□ -0.84
SS18-205ENST00000542420 PBXIP1Q96AQ6 731 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 MOCOSQ96EN8 888 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TRIM54Q9BYV2 358 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 CEP44Q9C0F1 390 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 RDH14Q9HBH5 336 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 TMEM165Q9HC07 324 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 GKN1Q9NS71 199 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 ABCB8Q9NUT2 735 aa9.78□□□□□ -0.84
SS18-205ENST00000542420 A0A0J9YYE9 177 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 C2orf78A6NCI8 922 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 AGAP14A8MT82 685 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 E5RI56 91 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 SNX2O60749 519 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 ATP6V1G1O75348 118 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 GLUD1P00367 558 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 TRBC1P01850 177 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 ITGALP20701 1170 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 SLC7A1P30825 629 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 DPP6P42658 865 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 CLCN7P51798 805 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 BCL2L1Q07817 233 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 TSNQ15631 228 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 ZRANB3Q5FWF4 1079 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 GRAMD4Q6IC98 578 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 PSAPL1Q6NUJ1 521 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 EFHBQ8N7U6 833 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 NPAS2Q99743 824 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 YIPF2Q9BWQ6 316 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 GPR63Q9BZJ6 419 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 UNKQ9C0B0 810 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms