RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 SPATA22Q8NHS9 363 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 DTX3LQ8TDB6 740 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 P3H4Q92791 437 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 MED8Q96G25 268 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 RBM41Q96IZ5 413 aaKnown RBP15.44■□□□□ 0.06
VPS33A-206ENST00000542310 TEFMQ96QE5 360 aaKnown RBP15.44■□□□□ 0.06
VPS33A-206ENST00000542310 ASPSCR1Q9BZE9 553 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 OR2AG1Q9H205 316 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 FAM153AQ9UHL3 310 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 PRKAB1Q9Y478 270 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 HYOU1Q9Y4L1 999 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 PCDHGA4Q9Y5G9 962 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 BSNQ9UPA5 3926 aa15.44■□□□□ 0.06
VPS33A-206ENST00000542310 MN1Q10571 1320 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 hCG_1818297A0A087WSY0 165 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 LOC285095A0A1B0GVY8 99 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 PRR19A6NJB7 356 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 HACD1B0YJ81 288 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 KMOO15229 486 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 SLC4A1P02730 911 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 PIRTP0C851 137 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 TNNT1P13805 278 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 PLA2G2AP14555 144 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 BPIP17213 487 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 CD68P34810 354 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 HMGCLP35914 325 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 MAGEA1P43355 309 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 TNNT3P45378 269 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 UBE2IP63279 158 aaKnown RBP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 WASHC5Q12768 1159 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 KDELC1Q6UW63 502 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 LRRTM4Q86VH4 590 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 BMPERQ8N8U9 685 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 CALR3Q96L12 384 aaKnown RBP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 QKIQ96PU8 341 aaKnown RBP eCLIP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 FCRL5Q96RD9 977 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 HACD3Q9P035 362 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 TMEM9Q9P0T7 183 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 CPNE7Q9UBL6 633 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.43■□□□□ 0.06
VPS33A-206ENST00000542310 ALG6Q9Y672 507 aa15.43■□□□□ 0.06
VPS33A-206ENST00000542310 ZNF462Q96JM2 2506 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 PMPCBO75439 489 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ZRANB2O95218 330 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ANKRD34CP0C6C1 535 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 NFKB1P19838 968 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 HLA-DPA1P20036 260 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 CYLC1P35663 651 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ARSDP51689 593 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 NFATC2Q13469 925 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 INSCQ1MX18 579 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 KAZNQ674X7 775 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 KDELC2Q7Z4H8 507 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ARHGAP22Q7Z5H3 698 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ZNF605Q86T29 641 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ZNF761Q86XN6 746 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-206ENST00000542310 RCOR2Q8IZ40 523 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ART4Q93070 314 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 ZPBPQ9BS86 351 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 TRIM5Q9C035 493 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 SEMA4CQ9C0C4 833 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 KLC4Q9NSK0 619 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 WDR70Q9NW82 654 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 KLHL8Q9P2G9 620 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-206ENST00000542310 SPO11Q9Y5K1 396 aa15.42■□□□□ 0.06
VPS33A-206ENST00000542310 TRBV23OR9-2A0A075B6M9 112 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 EFCAB7A8K855 629 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 AGRPO00253 132 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 SNX2O60749 519 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 PPFIA2O75334 1257 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 ZNF7P17097 686 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 XRCC1P18887 633 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 PPM1FP49593 454 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 WNT3AP56704 352 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 COPS2P61201 443 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 SRSF6Q13247 344 aaKnown RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 MPP3Q13368 585 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 XRCC4Q13426 336 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 LY6DQ14210 128 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 SPA17Q15506 151 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 DCAF12Q5T6F0 453 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 CRTC3Q6UUV7 619 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 WASH2PQ6VEQ5 465 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 BBS12Q6ZW61 710 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 VASH2Q86V25 355 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 FAM129CQ86XR2 697 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 RBM12BQ8IXT5 1001 aaKnown RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 HTR3CQ8WXA8 447 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 PMEPA1Q969W9 287 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 ZCCHC2Q9C0B9 1178 aaKnown RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 OSGEPL1Q9H4B0 414 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 WASH6PQ9NQA3 447 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 POT1Q9NUX5 634 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 SLC39A1Q9NY26 324 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 SAE1Q9UBE0 346 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-206ENST00000542310 TRHDEQ9UKU6 1024 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 PCDHA13Q9Y5I0 950 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 B3GALT1Q9Y5Z6 326 aa15.41■□□□□ 0.06
VPS33A-206ENST00000542310 APOC4-APOC2K7ER74 178 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms