RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FEM1AQ9BSK4 669 aa12.76□□□□□ -0.37
SFSWAP-209ENST00000540469 ERVK-6Q9BXR3 956 aa12.76□□□□□ -0.37
SFSWAP-209ENST00000540469 RGS18Q9NS28 235 aa12.76□□□□□ -0.37
SFSWAP-209ENST00000540469 CITO14578 2027 aa12.76□□□□□ -0.37
SFSWAP-209ENST00000540469 EVPLQ92817 2033 aa12.76□□□□□ -0.37
SFSWAP-209ENST00000540469 TCRBV5S2A0A599 114 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 NUAK1O60285 661 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FTH1P02794 183 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CYBBP04839 570 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CYP4B1P13584 511 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CD40LGP29965 261 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SCNN1AP37088 669 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 GP2P55259 537 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 EEFSECP57772 596 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CTF1Q16619 201 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 KYAT1Q16773 422 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ADPRMQ3LIE5 342 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SMYD5Q6GMV2 418 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ARHGAP36Q6ZRI8 547 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ELMO1Q92556 727 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FKBP10Q96AY3 582 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 AURKBQ96GD4 344 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 GPR20Q99678 358 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 THUMPD3Q9BV44 507 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ULBP1Q9BZM6 244 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 TKTL2Q9H0I9 626 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CXCL16Q9H2A7 254 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SDR39U1Q9NRG7 319 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 RBM22Q9NW64 420 aaKnown RBP eCLIP12.75□□□□□ -0.375e-11■■■■■ 35.9
SFSWAP-209ENST00000540469 C3orf18Q9UK00 162 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SCN4AP35499 1836 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 UNCXA6NJT0 531 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 RFPL2O75678 378 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ARNTP27540 789 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FMO3P31513 532 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 PIGAP37287 484 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ARCN1P48444 511 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 KCNC1P48547 511 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 POLR2JP52435 117 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 PHC1P78364 1004 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 TRIP4Q15650 581 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FBXO47Q5MNV8 452 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FNDC5Q8NAU1 212 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 OR6Q1Q8NGQ2 317 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM162AQ96A26 154 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 C12orf42Q96LP6 360 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SCN3BQ9NY72 215 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 LY75O60449 1722 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ZBTB42B2RXF5 422 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ENO2P09104 434 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 ALDH7A1P49419 539 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 RBBP7Q16576 425 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 HIST2H2ACQ16777 129 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 NBPF12Q5TAG4 269 aaPredicted RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SULT1C3Q6IMI6 304 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 GALNT5Q7Z7M9 940 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 CNTN4Q8IWV2 1026 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 NIM1KQ8IY84 436 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 DCBLD1Q8N8Z6 715 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 PROX1Q92786 737 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 LRRC3Q9BY71 257 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 KLK14Q9P0G3 267 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 COMMD10Q9Y6G5 202 aa12.75□□□□□ -0.37
SFSWAP-209ENST00000540469 SCN1AP35498 2009 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 IGKV6-21A0A0C4DH24 114 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 GUCY1B2O75343 617 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TULP3O75386 442 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ARIH2O95376 493 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 APOA1P02647 267 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TXNP10599 105 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 INSRRP14616 1297 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 GALNT1Q10472 559 aaPredicted RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CTU2Q2VPK5 515 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 UBE2UQ5VVX9 321 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ANKRD34AQ69YU3 496 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 PIK3C3Q8NEB9 887 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 PTCD2Q8WV60 388 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 VMP1Q96GC9 406 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TBCDQ9BTW9 1192 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 UGT2B28Q9BY64 529 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 REXO4Q9GZR2 422 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 GLOD4Q9HC38 313 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 MYOZ2Q9NPC6 264 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 LOC100130705A0A1B0GUX0 176 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CNTN5O94779 1100 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ITIH1P19827 911 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CSRP3P50461 194 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 PPP5CP53041 499 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 EMX1Q04741 257 aaPredicted RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TRAF3Q13114 568 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CAMK2BQ13554 666 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 KIAA0930Q6ICG6 404 aaPredicted RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 GATAD2AQ86YP4 633 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM126BQ8IXS8 530 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 EID3Q8N140 333 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ITCHQ96J02 903 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TEX37Q96LM6 180 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 PRKD2Q9BZL6 878 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms