RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ITGB3P05106 788 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 CYP1A2P05177 515 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 FGRP09769 529 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 PKLRP30613 574 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 SNTA1Q13424 505 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 KYAT1Q16773 422 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 PAPD4Q6PIY7 484 aaKnown RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 SPATA19Q7Z5L4 167 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 TMEM199Q8N511 208 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 SIMC1Q8NDZ2 872 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 LNX1Q8TBB1 728 aaPredicted RBP8.71□□□□□ -1.02
YBX3-208ENST00000540447 TESCQ96BS2 214 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 PPM1MQ96MI6 270 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 AGAP2Q99490 1192 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 EBF4Q9BQW3 602 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 HTATIP2Q9BUP3 242 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ZYG11BQ9C0D3 744 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 CAPN10Q9HC96 672 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 MEMO1Q9Y316 297 aa8.71□□□□□ -1.02
YBX3-208ENST00000540447 ATP10AO60312 1499 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 LAMC1P11047 1609 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 F8W036 122 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 M0QYT0 321 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CYB561D2O14569 222 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 POLR1CO15160 346 aaPredicted RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 MLYCDO95822 493 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RPN2P04844 631 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ZDHHC11BP0C7U3 371 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 IL7RP16871 459 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PTX3P26022 381 aaPredicted RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 GRIA1P42261 906 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 MLLT6P55198 1093 aaPredicted RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 BLOC1S1P78537 153 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RPTNQ6XPR3 784 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 USP45Q70EL2 814 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ADGRG6Q86SQ4 1221 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CUZD1Q86UP6 607 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ERVK-19Q9WJR5 959 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CLCA3PQ9Y6N3 262 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ABCA10Q8WWZ4 1543 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 FAM237AA0A1B0GTK4 181 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 UNCXA6NJT0 531 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 TNFRSF11BO00300 401 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 DCLK1O15075 740 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 TOXO94900 526 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PTPN6P29350 595 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CD6P30203 668 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 IKBKEQ14164 716 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CRY1Q16526 586 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RNF151Q2KHN1 245 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 FAM198BQ6UWH4 519 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ELMOD1Q8N336 334 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 OR52E6Q96RD3 313 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 MGME1Q9BQP7 344 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ASF1AQ9Y294 204 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 TESMINQ9Y4I5 508 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PCYT1BQ9Y5K3 369 aaPredicted RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 ARHGEF40Q8TER5 1519 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ABCC10Q5T3U5 1492 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RBAK-RBAKDNI3L0D1 243 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RFPL3O75679 317 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 DNAJB5O75953 348 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 RAB10P61026 200 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PITRM1Q5JRX3 1037 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 DESI1Q6ICB0 168 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 MIB1Q86YT6 1006 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 SLC44A5Q8NCS7 719 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 GANCQ8TET4 914 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ALG3Q92685 438 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 MTFMTQ96DP5 389 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 RRNAD1Q96FB5 475 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 ARL6Q9H0F7 186 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 STK32BQ9NY57 414 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 OGTO15294 1046 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 HOXC8P31273 242 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ALDH9A1P49189 494 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 POLR2JP52435 117 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 RPL38P63173 70 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 GIT2Q14161 759 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 TSTQ16762 297 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 MGAT5BQ3V5L5 792 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 SCIMPQ6UWF3 145 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 GPSM1Q86YR5 675 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 NIM1KQ8IY84 436 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 BANPQ8N9N5 519 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ZSWIM3Q96MP5 696 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PSD2Q9BQI7 771 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 SH2D3AQ9BRG2 576 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ELAC1Q9H777 363 aaKnown RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 TM9SF3Q9HD45 589 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 KLQ9UEF7 1012 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ADAMTS6Q9UKP5 1117 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 AATKQ6ZMQ8 1374 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PLB1Q6P1J6 1458 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 HACD1B0YJ81 288 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 FAM155BO75949 473 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PRKCAP17252 672 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 TUBG1P23258 451 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 OPRL1P41146 370 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 ETV5P41161 510 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms