RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRIM17Q9Y577 477 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 FAM92AA1XBS5 289 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 PAPSS2O95340 614 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 CKMP06732 381 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 HMBOX1Q6NT76 420 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 SLC2A7Q6PXP3 512 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 UGT2A3Q6UWM9 527 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 CHSY3Q70JA7 882 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 HS6ST3Q8IZP7 471 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 STAG3L4Q8TBR4 150 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ZNF483Q8TF39 744 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 THEGQ9P2T0 379 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 VPS51Q9UID3 782 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 MBD1Q9UIS9 605 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 CPQQ9Y646 472 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 C1orf232A0A0U1RR37 186 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ARHGAP10A1A4S6 786 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ACRP10323 421 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 PKMP14618 531 aaKnown RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 CHN2P52757 468 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 MYBPC1Q00872 1141 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 HMGCS1Q01581 520 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ADGRF1Q5T601 910 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ANKS6Q68DC2 871 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 ST13P4Q8IZP2 240 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 ADGRG2Q8IZP9 1017 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 TMEM102Q8N9M5 508 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 CCDC126Q96EE4 140 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 RANBP9Q96S59 729 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 GPBP1L1Q9HC44 474 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 NLE1Q9NVX2 485 aaPredicted RBP16.76■□□□□ 0.27
USP28-208ENST00000540438 HACD3Q9P035 362 aa16.76■□□□□ 0.27
USP28-208ENST00000540438 TMEM189-UBE2V1I3L0A0 370 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 SOCS2O14508 198 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 HTR7P34969 479 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MAPKAPK2P49137 400 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 CDH4P55283 916 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 FOXD4Q12950 439 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 NFYCQ13952 458 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 COL9A2Q14055 689 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 LIN52Q52LA3 116 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 LETMD1Q6P1Q0 360 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 IL27RAQ6UWB1 636 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 DHFR2Q86XF0 187 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 GPSM1Q86YR5 675 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 FAM126BQ8IXS8 530 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 NAT16Q8N8M0 369 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 TMIGD2Q96BF3 282 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 EGFL8Q99944 293 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MAGEH1Q9H213 219 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 CMTM6Q9NX76 183 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 EPS15L1Q9UBC2 864 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 CNOT6Q9ULM6 557 aaKnown RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 YIPF1Q9Y548 306 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 ASB3Q9Y575 518 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 KDELR3O43731 214 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MTPNP58546 118 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 USP41Q3LFD5 358 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 FRA10AC1Q70Z53 315 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 CHST15Q7LFX5 561 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 SLC15A3Q8IY34 581 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MIER2Q8N344 545 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 RNF175Q8N4F7 328 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 GABPB2Q8TAK5 448 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 CD200R1Q8TD46 325 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 SLC25A23Q9BV35 468 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MTG2Q9H4K7 406 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MAGED1Q9Y5V3 778 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 A0A0C4DFX4 3053 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 PIKFYVEQ9Y2I7 2098 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 SYNCRIPO60506 623 aaKnown RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 WISP3O95389 354 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 CAPN1P07384 714 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 IL12AP29459 219 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 MAPK10P53779 464 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 DEFB103AP81534 67 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 PTRHD1Q6GMV3 140 aaKnown RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 SETD3Q86TU7 594 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 OFCC1Q8IZS5 231 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 METTL25Q8N6Q8 603 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 ZNF366Q8N895 744 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 TADA1Q96BN2 335 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 NR1H4Q96RI1 486 aaPredicted RBP16.75■□□□□ 0.27
USP28-208ENST00000540438 NDUFAF1Q9Y375 327 aa16.75■□□□□ 0.27
USP28-208ENST00000540438 ANKRD36A6QL64 1941 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 KIF3CO14782 793 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 TBC1D4O60343 1298 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 ZDHHC11BP0C7U3 371 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 ERVPABLB-1P60509 514 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 SLC30A9Q6PML9 568 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 LMNTD1Q8N9Z9 388 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 METTL6Q8TCB7 284 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 PYCR2Q96C36 320 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 ASB9Q96DX5 294 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 FEM1AQ9BSK4 669 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.74■□□□□ 0.27
USP28-208ENST00000540438 ASB8Q9H765 288 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 SLC30A1Q9Y6M5 507 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 PRSS51A0A1B0GVH4 220 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 GIPC1O14908 333 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms