RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TCTN2Q96GX1 697 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 GBP4Q96PP9 640 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 WDR24Q96S15 920 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 RUFY1Q96T51 708 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 CARD9Q9H257 536 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 ZWILCHQ9H900 591 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 AKIRIN1Q9H9L7 192 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 PDE7BQ9NP56 450 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 KLC4Q9NSK0 619 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 PARVAQ9NVD7 372 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 TAB2Q9NYJ8 693 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 SCHIP1Q9P0W5 487 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF624Q9P2J8 865 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 DNPEPQ9ULA0 475 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 SRPK3Q9UPE1 567 aa11.46□□□□□ -0.57
CLSTN3-209ENST00000539982 ZNF106Q9H2Y7 1883 aaKnown RBP11.46□□□□□ -0.58
CLSTN3-209ENST00000539982 CEACAM4O75871 244 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 TIAF1O95411 115 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 CLDN7O95471 211 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 POU3F2P20265 443 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 AMPD1P23109 780 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 MIPP30301 263 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 EPHB1P54762 984 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 RPS18P62269 152 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 C1QL3Q5VWW1 255 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 PWWP2BQ6NUJ5 590 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 FAM199XQ6PEV8 388 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 TMCO3Q6UWJ1 677 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 CLEC17AQ6ZS10 378 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 CYP4V2Q6ZWL3 525 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 TRIM48Q8IWZ4 208 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 SRRM1Q8IYB3 904 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 FAM83DQ9H4H8 585 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 MAP10Q9P2G4 905 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 ATXN10Q9UBB4 475 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 EPHA6Q9UF33 1036 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 RARRES3Q9UL19 164 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 FARSAQ9Y285 508 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC5A6Q9Y289 635 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 ADGRG1Q9Y653 693 aa11.45□□□□□ -0.58
CLSTN3-209ENST00000539982 RGSL1A5PLK6 1076 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 TMEM191CA6NGB0 347 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 FADS2P1A8MWK0 482 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 H3BRJ5 948 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 CBX6O95503 412 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF8P17098 575 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 LPOP22079 712 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SPINT3P49223 89 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 ITKQ08881 620 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 LAMB3Q13751 1172 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 DPCR1Q3MIW9 517 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 FKBP15Q5T1M5 1219 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 HENMT1Q5T8I9 393 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 PLEKHA7Q6IQ23 1121 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 FAM92BQ6ZTR7 304 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 RHOT1Q8IXI2 618 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC34A3Q8N130 599 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 ATPAF2Q8N5M1 289 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 TEX26Q8N6G2 289 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 PNPLA2Q96AD5 504 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 C5orf34Q96MH7 638 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 LYSMD1Q96S90 227 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 MFRPQ9BY79 579 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 RAB33BQ9H082 229 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 OSGEPL1Q9H4B0 414 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 TRIM39Q9HCM9 518 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC40A1Q9NP59 571 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 NT5MQ9NPB1 228 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 ETNK2Q9NVF9 386 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 LUZP4Q9P127 313 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SEMA5BQ9P283 1151 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SIK3Q9Y2K2 1263 aa11.44□□□□□ -0.58
CLSTN3-209ENST00000539982 SSU72P8A0A1W2PR75 194 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 GPR89AB7ZAQ6 455 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 PRLP01236 227 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 GPR89BP0CG08 455 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 ATP1A3P13637 1013 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 FOLR1P15328 257 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 CES1P23141 567 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 ARL4AP40617 200 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 CAPZBP47756 277 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 RIPPLY3P57055 190 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 PDE1BQ01064 536 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 ACY1Q03154 408 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 TUBB3Q13509 450 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 IL10RAQ13651 578 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 IHHQ14623 411 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC6A19Q695T7 634 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 IRGCQ6NXR0 463 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 PPP1R2P3Q6NXS1 205 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 ABRAXAS1Q6UWZ7 409 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 POLNQ7Z5Q5 900 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 RBM12BQ8IXT5 1001 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 RBMXL3Q8N7X1 1067 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 SIDT2Q8NBJ9 832 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 TTC13Q8NBP0 860 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 FDCSPQ8NFU4 85 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 UBXN4Q92575 508 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 RSC1A1Q92681 617 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms