RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	PBX3	P40426	434 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	MMP14	P50281	582 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	CLCN3	P51790	818 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	MRPL12	P52815	198 aa	Known RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	MLLT10	P55197	1068 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	CDH8	P55286	799 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	PLIN5	Q00G26	463 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	MC1R	Q01726	317 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	NIPAL4	Q0D2K0	466 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	GTF2H2	Q13888	395 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	COL28A1	Q2UY09	1125 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ASPRV1	Q53RT3	343 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	CCNYL2	Q5T2Q4	361 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ACSM2B	Q68CK6	577 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	GTF2H2C	Q6P1K8	395 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	KLHL35	Q6PF15	583 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	BRAT1	Q6PJG6	821 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	C19orf48	Q6RUI8	117 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	GFRAL	Q6UXV0	394 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	KCTD8	Q6ZWB6	473 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	PLEKHM3	Q6ZWE6	761 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	DPPA4	Q7L190	304 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ZNF771	Q7L3S4	317 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	HAPLN4	Q86UW8	402 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	TMEM219	Q86XT9	240 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	FOXRED2	Q8IWF2	684 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ARHGAP12	Q8IWW6	846 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	CCDC13	Q8IYE1	715 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	C1orf87	Q8N0U7	546 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	CCDC89	Q8N998	374 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	SPATA22	Q8NHS9	363 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	SLC20A1	Q8WUM9	679 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ABTB1	Q969K4	478 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	TAAR8	Q969N4	342 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	WBP2	Q969T9	261 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	SAT2	Q96F10	170 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	SPRY4	Q9C004	299 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	TKTL2	Q9H0I9	626 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	UPF2	Q9HAU5	1272 aa	Known RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	RANGRF	Q9HD47	186 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	KLHL1	Q9NR64	748 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	ACSS1	Q9NUB1	689 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	TMEM30A	Q9NV96	361 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	POLG2	Q9UHN1	485 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	RALY	Q9UKM9	306 aa	Known RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	INTS6	Q9UL03	887 aa	Known RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	FAF1	Q9UNN5	650 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	GPR34	Q9UPC5	381 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	R3HDM2	Q9Y2K5	976 aa	Known RBP	2.72	□□□□□ -1.97
CD44-238	ENST00000534296	KLHL20	Q9Y2M5	609 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	PIAS3	Q9Y6X2	628 aa		2.72	□□□□□ -1.97
CD44-238	ENST00000534296	PDS5A	Q29RF7	1337 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296		A0A1W2PQM1	296 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296		H3BQ06	376 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	TCERG1	O14776	1098 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SCAMP1	O15126	338 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	VILL	O15195	856 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	IPO8	O15397	1037 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ZNHIT1	O43257	154 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	GFPT2	O94808	682 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	FTCD	O95954	541 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	PLG	P00747	810 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	RB1	P06400	928 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SRPRA	P08240	638 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	MYOD1	P15172	320 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ITGA2	P17301	1181 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	GCH1	P30793	250 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	CORO1A	P31146	461 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	CDKN1A	P38936	164 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	UBA7	P41226	1012 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	PRCP	P42785	496 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	PIP4K2A	P48426	406 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	GALC	P54803	685 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	AIMP2	Q13155	320 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	PRPF4B	Q13523	1007 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	CCDC96	Q2M329	555 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SIRPB2	Q5JXA9	342 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	GKAP1	Q5VSY0	366 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SNX30	Q5VWJ9	437 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SMIM29	Q86T20	159 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	SATL1	Q86VE3	508 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	RDM1	Q8NG50	284 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	OR2AK2	Q8NG84	335 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	DUSP19	Q8WTR2	217 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	TMEM255B	Q8WV15	326 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	PSPC1	Q8WXF1	523 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ARHGEF26	Q96DR7	871 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	C1orf74	Q96LT6	269 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ACOX2	Q99424	681 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	TRMT61B	Q9BVS5	477 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	STRA6	Q9BX79	667 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	C1QTNF1	Q9BXJ1	281 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	LRRC4	Q9HBW1	653 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ZFP57	Q9NU63	452 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	CWC15	Q9P013	229 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	STK39	Q9UEW8	545 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	ADD3	Q9UEY8	706 aa	Known RBP	2.71	□□□□□ -1.98
CD44-238	ENST00000534296	CAPN7	Q9Y6W3	813 aa		2.71	□□□□□ -1.98
CD44-238	ENST00000534296	DOCK7	Q96N67	2140 aa		2.71	□□□□□ -1.98

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