RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PERM1Q5SV97 790 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 CERCAMQ5T4B2 595 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ZNF648Q5T619 568 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 GPRC6AQ5T6X5 926 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 HES3Q5TGS1 186 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 C17orf82Q86X59 251 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 CACTIN-AS1Q8N1I8 211 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 DNAAF3Q8N9W5 541 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 GDAP1Q8TB36 358 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ZNF398Q8TD17 642 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ZDHHC1Q8WTX9 485 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 DNAJC1Q96KC8 554 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 NAPGQ99747 312 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ZCCHC2Q9C0B9 1178 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 DPEP2Q9H4A9 486 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 NLE1Q9NVX2 485 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PIH1D1Q9NWS0 290 aaKnown RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PRKAB1Q9Y478 270 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PLEKHM1Q9Y4G2 1056 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 ARHGEF17Q96PE2 2063 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-208ENST00000532560 PLXNB3Q9ULL4 1909 aa14.86□□□□□ -0.03
CPSF1-208ENST00000532560 MROH6A6NGR9 719 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 AGAP14A8MT82 685 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 H7C0S8 307 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A9O60656 530 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CDK14O94921 469 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 SLU7O95391 586 aaKnown RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 ACP5P13686 325 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A6P19224 532 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 TPSB2P20231 275 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 ITGALP20701 1170 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A1P22309 533 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A4P22310 534 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A3P35503 534 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A5P35504 534 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 GRIA1P42261 906 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CLCNKAP51800 687 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 ETF1P62495 437 aaKnown RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 TMEM115Q12893 351 aaPredicted RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 LAMB3Q13751 1172 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 GTF2H3Q13889 308 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 TPSAB1Q15661 275 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CCDC137Q6PK04 289 aaKnown RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CCNI2Q6ZMN8 369 aaPredicted RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CHST15Q7LFX5 561 aaPredicted RBP14.85□□□□□ -0.03
CPSF1-208ENST00000532560 LRRTM4Q86VH4 590 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 SFTPA2Q8IWL1 248 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 MAPK15Q8TD08 544 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 STYXQ8WUJ0 223 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 GATA6Q92908 595 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 ULK4Q96C45 1275 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 RANBP9Q96S59 729 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 CCDC3Q9BQI4 270 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 TIMM29Q9BSF4 260 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A7Q9HAW7 530 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A10Q9HAW8 530 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 UGT1A8Q9HAW9 530 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 RIMKLBQ9ULI2 386 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 NEU2Q9Y3R4 380 aa14.85□□□□□ -0.03
CPSF1-208ENST00000532560 HEATR9A2RTY3 570 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CTAGE9A4FU28 777 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 KMOO15229 486 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 NUDT21O43809 227 aaKnown RBP14.84□□□□□ -0.03
CPSF1-208ENST00000532560 PNLIPP16233 465 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 GLB1P16278 677 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CA5AP35218 305 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 MAGEA6P43360 314 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 TMPRSS15P98073 1019 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CDK16Q00536 496 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CDCP2Q5VXM1 449 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CRTC3Q6UUV7 619 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 SNX20Q7Z614 316 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 ZNF547Q8IVP9 402 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 NAGSQ8N159 534 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 WDR48Q8TAF3 677 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 GRK7Q8WTQ7 553 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 CCDC74AQ96AQ1 378 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 TMEM121BQ9BXQ6 578 aaPredicted RBP14.84□□□□□ -0.03
CPSF1-208ENST00000532560 ASB8Q9H765 288 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 SAR1BQ9Y6B6 198 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 SPEGQ15772 3267 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 ASXL3Q9C0F0 2248 aa14.84□□□□□ -0.03
CPSF1-208ENST00000532560 COL27A1Q8IZC6 1860 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TRBV5-4A0A0C4DH59 114 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 FAM149AA5PLN7 773 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 PRR19A6NJB7 356 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 AP3B1O00203 1094 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 CCL22O00626 93 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 FANCGO15287 622 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 KRT14P02533 472 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF7P17097 686 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-208ENST00000532560 AKT1P31749 480 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 MC4RP32245 332 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 MAZP56270 477 aaKnown RBP14.83□□□□□ -0.04
CPSF1-208ENST00000532560 CLDN6P56747 220 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 GPS1Q13098 491 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 KCNJ11Q14654 390 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TRIP13Q15645 432 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-208ENST00000532560 INSCQ1MX18 579 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 SKIDA1Q1XH10 827 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms