RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MOXD2PA6NHM9 499 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 EI24O14681 340 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 EEDO75530 441 aaKnown RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 RFC2P35250 354 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 CTBSQ01459 385 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 GRIK2Q13002 908 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 TMTC4Q5T4D3 741 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 GPR141Q7Z602 305 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 OR4K2Q8NGD2 314 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 OR2T11Q8NH01 316 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 FNDC8Q8TC99 324 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 SEPT8Q92599 483 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 BIRC8Q96P09 236 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 SLC30A3Q99726 388 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 KCTD14Q9BQ13 255 aaPredicted RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 NUSAP1Q9BXS6 441 aaKnown RBP19.11■□□□□ 0.65
VPS28-213ENST00000530983 BRINP2Q9C0B6 783 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 MUC13Q9H3R2 512 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 PCTPQ9UKL6 214 aa19.11■□□□□ 0.65
VPS28-213ENST00000530983 SYCE1LA8MT33 242 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 ENPP3O14638 875 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 SEC24DO94855 1032 aaPredicted RBP19.1■□□□□ 0.65
VPS28-213ENST00000530983 ESRRBO95718 433 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 C7P10643 843 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 FCGR1AP12314 374 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 CYBAP13498 195 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 CES1P23141 567 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 HOXD9P28356 352 aaPredicted RBP19.1■□□□□ 0.65
VPS28-213ENST00000530983 SOX11P35716 441 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 SFSWAPQ12872 951 aaKnown RBP19.1■□□□□ 0.65
VPS28-213ENST00000530983 TAF10Q12962 218 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 FUT11Q495W5 492 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 SCIMPQ6UWF3 145 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 CFAP52Q8N1V2 620 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 TMEM74Q96NL1 305 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 ZFYVE28Q9HCC9 887 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 OLA1Q9NTK5 396 aaKnown RBP19.1■□□□□ 0.65
VPS28-213ENST00000530983 EBF1Q9UH73 591 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 BLOC1S6Q9UL45 172 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 FRMPD3Q5JV73 1810 aa19.1■□□□□ 0.65
VPS28-213ENST00000530983 BTN3A1O00481 513 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 STX16O14662 325 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 KLK8O60259 260 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 MAGEA11P43364 429 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 RGRP47804 291 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CDKN1CP49918 316 aaPredicted RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 ZBED5Q49AG3 693 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 VARS2Q5ST30 1063 aaKnown RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 AFTPHQ6ULP2 937 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 LRRC43Q8N309 656 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 TMEM199Q8N511 208 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 PAPD5Q8NDF8 572 aaKnown RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 CYGBQ8WWM9 190 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 ISOC1Q96CN7 298 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 ACOX2Q99424 681 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 MGME1Q9BQP7 344 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 C1orf50Q9BV19 199 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CCDC68Q9H2F9 335 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 USP22Q9UPT9 525 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 PRG3Q9Y2Y8 225 aaPredicted RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 PCDHGA4Q9Y5G9 962 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CCDC154A6NI56 674 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 SLC22A3O75751 556 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 TSPAN12O95859 305 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 C1RP00736 705 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 UROSP10746 265 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 TACR2P21452 398 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CTGFP29279 349 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 OR1G1P47890 313 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CLLU1OSQ5K130 101 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 CLVS1Q8IUQ0 354 aaPredicted RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 MDGA1Q8NFP4 955 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 SMIM14Q96QK8 99 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 TLR8Q9NR97 1041 aaKnown RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 INTS7Q9NVH2 962 aaKnown RBP19.09■□□□□ 0.65
VPS28-213ENST00000530983 ASB1Q9Y576 335 aa19.09■□□□□ 0.65
VPS28-213ENST00000530983 NDUFS3O75489 264 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 ASGR1P07306 291 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 VARSP26640 1264 aaKnown RBP19.08■□□□□ 0.65
VPS28-213ENST00000530983 IL12AP29459 219 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 POLR2JP52435 117 aaKnown RBP19.08■□□□□ 0.65
VPS28-213ENST00000530983 ESRRGP62508 458 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 PTPRNQ16849 979 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 TIGD2Q4W5G0 525 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 DHRS4L2Q6PKH6 230 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 GLB1LQ6UWU2 654 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 GLT6D1Q7Z4J2 308 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 COLGALT2Q8IYK4 626 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 ESAMQ96AP7 390 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 ZBED2Q9BTP6 218 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 CD320Q9NPF0 282 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 C8orf4Q9NR00 106 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 LEF1Q9UJU2 399 aaPredicted RBP19.08■□□□□ 0.65
VPS28-213ENST00000530983 ANAPC2Q9UJX6 822 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 NOD1Q9Y239 953 aa19.08■□□□□ 0.65
VPS28-213ENST00000530983 TDRKHQ9Y2W6 561 aaKnown RBP19.08■□□□□ 0.65
VPS28-213ENST00000530983 MANSC4A6NHS7 340 aaPredicted RBP19.08■□□□□ 0.64
VPS28-213ENST00000530983 TMEM189-UBE2V1I3L0A0 370 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 CLOCKO15516 846 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 SNX2O60749 519 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms