RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ADSSL1Q8N142 457 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 AADATQ8N5Z0 425 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 IQCF1Q8N6M8 205 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 ANKRD52Q8NB46 1076 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 NEK9Q8TD19 979 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 SNAPC3Q92966 411 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 ARHGEF2Q92974 986 aaKnown RBP3.91□□□□□ -1.78
CD44-219ENST00000525685 ZNF479Q96JC4 524 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 SLITRK1Q96PX8 696 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 OR1F2PQ96R84 312 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 TMEM47Q9BQJ4 181 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 SDF4Q9BRK5 362 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 ZPBPQ9BS86 351 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 SLC25A33Q9BSK2 321 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 TEX13AQ9BXU3 409 aaPredicted RBP3.91□□□□□ -1.78
CD44-219ENST00000525685 TKTL2Q9H0I9 626 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 PLEKHA5Q9HAU0 1116 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 NRXN2Q9P2S2 1712 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 PCDHA7Q9UN72 937 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 RAI2Q9Y5P3 530 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 USP16Q9Y5T5 823 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 ANKRD36CQ5JPF3 1778 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 FANCIQ9NVI1 1328 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 KIF13BQ9NQT8 1826 aa3.91□□□□□ -1.78
CD44-219ENST00000525685 C10orf71Q711Q0 1435 aa3.9□□□□□ -1.78
CD44-219ENST00000525685 ARFGEF2Q9Y6D5 1785 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 A0A1W2PRG0 241 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 DYTNA2CJ06 578 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 F5H0A9 414 aaPredicted RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 IFNL4K9M1U5 179 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 TGFB1I1O43294 461 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 HSPA12AO43301 675 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 USO1O60763 962 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 STARD3NLO95772 234 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 DDX58O95786 925 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 SCGB1D1O95968 90 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 CENPBP07199 599 aaPredicted RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 HOXB7P09629 217 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 RFC4P35249 363 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 EIF5P55010 431 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 PRAMEP78395 509 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 DDR1Q08345 913 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 CSTF3Q12996 717 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 CRYMQ14894 314 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 NAB2Q15742 525 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 USP41Q3LFD5 358 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 SGO1Q5FBB7 561 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 C6orf141Q5SZD1 244 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 GGNBP1Q5YKI7 109 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 SIGIRRQ6IA17 410 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 METTL2BQ6P1Q9 378 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 CYP20A1Q6UW02 462 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 SLC36A4Q6YBV0 504 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 TMED6Q8WW62 240 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 ADAMTS14Q8WXS8 1223 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 NEUROG1Q92886 237 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 ZKSCAN4Q969J2 545 aaPredicted RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 MMABQ96EY8 250 aaPredicted RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 METTL2AQ96IZ6 378 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 MAP7D2Q96T17 732 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 BARD1Q99728 777 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 GLIS2Q9BZE0 524 aaPredicted RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 SMARCAD1Q9H4L7 1026 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 HINT3Q9NQE9 182 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 CNGB3Q9NQW8 809 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 SEPT11Q9NVA2 429 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 WNT16Q9UBV4 365 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 CNOT8Q9UFF9 292 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 NARFQ9UHQ1 456 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 MTMR6Q9Y217 621 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 R3HDM2Q9Y2K5 976 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 LYVE1Q9Y5Y7 322 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 MAU2Q9Y6X3 613 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 AFDNP55196 1824 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 TNRC6CQ9HCJ0 1690 aaKnown RBP3.9□□□□□ -1.79
CD44-219ENST00000525685 IL16Q14005 1332 aa3.9□□□□□ -1.79
CD44-219ENST00000525685 EVPLQ92817 2033 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 FSD2A1L4K1 749 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 C4orf47A7E2U8 309 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 PTGES3LE9PB15 166 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 SLC28A2O43868 658 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 NDUFS3O75489 264 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CAMTA2O94983 1202 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 MLYCDO95822 493 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 NGFRP08138 427 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 MMP10P09238 476 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 RARGP13631 454 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 MYL6BP14649 208 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 TMEM11P17152 192 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 EIF2S2P20042 333 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 CAPN3P20807 821 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 EIF2S3P41091 472 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 CASP2P42575 452 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 METAP2P50579 478 aaKnown RBP eCLIP3.89□□□□□ -1.79
CD44-219ENST00000525685 DCAF7P61962 342 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CEBPZQ03701 1054 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 Q0VFX4 171 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 SHBQ15464 509 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CTF1Q16619 201 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 C2orf68Q2NKX9 166 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms