RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 COL28A1Q2UY09 1125 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 SEL1L2Q5TEA6 688 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 MEI1Q5TIA1 1274 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 NKAIN2Q5VXU1 208 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 PDPK2PQ6A1A2 396 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 DENND5AQ6IQ26 1287 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 ARHGEF18Q6ZSZ5 1173 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 ZNF438Q7Z4V0 828 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 TTC13Q8NBP0 860 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 GDAP1Q8TB36 358 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 NAT14Q8WUY8 206 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 PRR11Q96HE9 360 aaPredicted RBP16.29■□□□□ 0.2
DDX41-213ENST00000512027 NAF1Q96HR8 494 aaKnown RBP16.29■□□□□ 0.2
DDX41-213ENST00000512027 TBL1YQ9BQ87 522 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 NUDT22Q9BRQ3 303 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 OSGEPL1Q9H4B0 414 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 TRIM39Q9HCM9 518 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 ASCL3Q9NQ33 180 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 KLC4Q9NSK0 619 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 DNAJC16Q9Y2G8 782 aa16.29■□□□□ 0.2
DDX41-213ENST00000512027 AAR2Q9Y312 384 aaKnown RBP16.29■□□□□ 0.2
DDX41-213ENST00000512027 CCDC187A0A096LP49 1063 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 GLYATL1P3A0A0U1RQE8 302 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 C5orf60A6NFR6 353 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 CCDC175P0C221 793 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 PNLIPP16233 465 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 EIF2S3P41091 472 aaKnown RBP16.28■□□□□ 0.2
DDX41-213ENST00000512027 CCDC173Q0VFZ6 552 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 INSCQ1MX18 579 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 MAP9Q49MG5 647 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 USP53Q70EK8 1073 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 PRUNE1Q86TP1 453 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 ZNF547Q8IVP9 402 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 SFRP1Q8N474 314 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 OR4K2Q8NGD2 314 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 OR13C4Q8NGS5 318 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 C1orf54Q8WWF1 131 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 FGF11Q92914 225 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 VPS35Q96QK1 796 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 SEMA6CQ9H3T2 930 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 RMI1Q9H9A7 625 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 PRDM8Q9NQV8 689 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 PIH1D1Q9NWS0 290 aaKnown RBP16.28■□□□□ 0.2
DDX41-213ENST00000512027 FKBPLQ9UIM3 349 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 LHX6Q9UPM6 363 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 PKP3Q9Y446 797 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 FAM208BQ5VWN6 2430 aa16.28■□□□□ 0.2
DDX41-213ENST00000512027 IGSF10Q6WRI0 2623 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 A6NCN8 305 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 CCL22O00626 93 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 CHUKO15111 745 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 STX7O15400 261 aaKnown RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 CDK14O94921 469 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 ACTN2P35609 894 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 TMPRSS15P98073 1019 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 MSLNQ13421 630 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 NFATC2Q13469 925 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 NR1D2Q14995 579 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 SEPT7Q16181 437 aaKnown RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 KCTD19Q17RG1 926 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 LRRTM4Q86VH4 590 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 SLC13A5Q86YT5 568 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 WDR36Q8NI36 951 aaKnown RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 SNIP1Q8TAD8 396 aaKnown RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 CCDC97Q96F63 343 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 LIN37Q96GY3 246 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 TMEM9Q9P0T7 183 aa16.27■□□□□ 0.2
DDX41-213ENST00000512027 SCHIP1Q9P0W5 487 aaPredicted RBP16.27■□□□□ 0.2
DDX41-213ENST00000512027 A0A087WV48 116 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 IGHV1OR21-1A0A087WYE8 117 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 LIASO43766 372 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 ETS1P14921 441 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 ZNF7P17097 686 aaPredicted RBP16.26■□□□□ 0.19
DDX41-213ENST00000512027 TPH1P17752 444 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 ITIH1P19827 911 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 LPOP22079 712 aaPredicted RBP16.26■□□□□ 0.19
DDX41-213ENST00000512027 MPSTP25325 297 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 CD1CP29017 333 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 CSF2RBP32927 897 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 CTSCP53634 463 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 CFHR1Q03591 330 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 TMEM115Q12893 351 aaPredicted RBP16.26■□□□□ 0.19
DDX41-213ENST00000512027 SNX1Q13596 522 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 RPS6KA1Q15418 735 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 TAF1AQ15573 450 aaPredicted RBP16.26■□□□□ 0.19
DDX41-213ENST00000512027 PARP6Q2NL67 630 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 PHF19Q5T6S3 580 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 GPRC6AQ5T6X5 926 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 KCTD11Q693B1 232 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 IYDQ6PHW0 289 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 ZNF574Q6ZN55 896 aaPredicted RBP16.26■□□□□ 0.19
DDX41-213ENST00000512027 RAB11FIP2Q7L804 512 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 C11orf96Q7Z7L8 435 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 TRAPPC5Q8IUR0 188 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 SLITRK4Q8IW52 837 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 KLHDC8BQ8IXV7 354 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 RCBTB1Q8NDN9 531 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 GRPEL1Q9HAV7 217 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 KCNK4Q9NYG8 393 aa16.26■□□□□ 0.19
DDX41-213ENST00000512027 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms