RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ZNF236Q9UL36 1845 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 C19orf81C9J6K1 198 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 BEST1O76090 585 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 PRR35P0CG20 571 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 CES1P23141 567 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 GRK3P35626 688 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 BMPR1AP36894 532 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 MTHFRP42898 656 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 IGBP1P78318 339 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 ACOX1Q15067 660 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 C9orf57Q5W0N0 161 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 RHOXF1Q8NHV9 184 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 CALML6Q8TD86 181 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 KCTD13Q8WZ19 329 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 ZNF486Q96H40 463 aaPredicted RBP16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 PIF1Q9H611 641 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 SMURF2Q9HAU4 748 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 GLOD4Q9HC38 313 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 ENTPD7Q9NQZ7 604 aa16.98■□□□□ 0.31
SQSTM1-211ENST00000506690 ANKRD12Q6UB98 2062 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 ANKRD34BA5PLL1 514 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 TPD52L2O43399 206 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 VPS4BO75351 444 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 SIX3O95343 332 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CHRNA4P43681 627 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CDKN2DP55273 166 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 SULT1C3Q6IMI6 304 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 VASH1Q7L8A9 365 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 SPATA19Q7Z5L4 167 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 ADCK1Q86TW2 530 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 DTWD1Q8N5C7 304 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 LINC01465Q8N7H1 131 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 PTGR2Q8N8N7 351 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 GLMNQ92990 594 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 YIPF6Q96EC8 236 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 SPATA33Q96N06 139 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 ZNF300Q96RE9 604 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CLSTN3Q9BQT9 956 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 AIG1Q9NVV5 245 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 USE1Q9NZ43 259 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 BTRCQ9Y297 605 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 SNX10Q9Y5X0 201 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 FAM92AA1XBS5 289 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 ISPDA4D126 451 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CCDC154A6NI56 674 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 PTGES3LE9PB15 166 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 LRIG2O94898 1065 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CYBBP04839 570 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 PCNAP12004 261 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 EIF2DP41214 584 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 PHC1P78364 1004 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 KCNAB2Q13303 367 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 FAM98BQ52LJ0 330 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 NOL9Q5SY16 702 aaKnown RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 CATSPEREQ5SY80 951 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 TMEM236Q5W0B7 351 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 IL31Q6EBC2 164 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 RANBP10Q6VN20 620 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 ARHGAP36Q6ZRI8 547 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 GALNT7Q86SF2 657 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 Q8N9G6 341 aaPredicted RBP16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 DHRS1Q96LJ7 313 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 YME1L1Q96TA2 773 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 OR12D3Q9UGF7 316 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 GJD2Q9UKL4 321 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 TESMINQ9Y4I5 508 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 MIA3Q5JRA6 1907 aa16.97■□□□□ 0.31
SQSTM1-211ENST00000506690 LRRC14BA6NHZ5 514 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 PEX10O60683 326 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 NDST3O95803 873 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 NPPAP01160 153 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 VTNP04004 478 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 CCDC159P0C7I6 412 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 ALDH7A1P49419 539 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 GEMP55040 296 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 VBP1P61758 197 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 ADAM17P78536 824 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 PNPLA1Q8N8W4 532 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 BEST2Q8NFU1 509 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 ITFG1Q8TB96 612 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 CAPSLQ8WWF8 208 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 ZNF566Q969W8 418 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 SDCCAG3Q96C92 435 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 NSUN5Q96P11 429 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 SLIRPQ9GZT3 109 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 AKT3Q9Y243 479 aa16.96■□□□□ 0.31
SQSTM1-211ENST00000506690 ILVBLA1L0T0 632 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 RFPL2O75678 378 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 NPR3P17342 541 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 CCNCP24863 283 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 ZNF135P52742 658 aaPredicted RBP16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 UFM1P61960 85 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 SLC13A2Q13183 592 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 FBXO47Q5MNV8 452 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 ZNF691Q5VV52 312 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 DCAF15Q66K64 600 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 HID1Q8IV36 788 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 LYSMD2Q8IV50 215 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 SH3RF2Q8TEC5 729 aa16.96■□□□□ 0.3
SQSTM1-211ENST00000506690 PGAP3Q96FM1 320 aaPredicted RBP16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms