RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 XRCC1P18887 633 aaPredicted RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 LPOP22079 712 aaPredicted RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 NSFP46459 744 aaKnown RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 MAXP61244 160 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 OGDHQ02218 1023 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 ZNF235Q14590 738 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 CT47A1Q5JQC4 288 aaPredicted RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 PPP1R15BQ5SWA1 713 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 CACHD1Q5VU97 1274 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 RFX8Q6ZV50 586 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 PHF13Q86YI8 300 aaPredicted RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 HPS6Q86YV9 775 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 AVL9Q8NBF6 648 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 RSC1A1Q92681 617 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 MCEEQ96PE7 176 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 MGME1Q9BQP7 344 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 CNPY3Q9BT09 278 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 UNKQ9C0B0 810 aaKnown RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 DHX35Q9H5Z1 703 aaKnown RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 FANCLQ9NW38 375 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 ZNF624Q9P2J8 865 aaPredicted RBP16.23■□□□□ 0.19
VIM-208ENST00000497849 NF1P21359 2839 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 AKAP9Q99996 3911 aa16.23■□□□□ 0.19
VIM-208ENST00000497849 ARHGAP10A1A4S6 786 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 ANKUB1A6NFN9 424 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 FZD6O60353 706 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 PRKCSHP14314 528 aaPredicted RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 AMD1P17707 334 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 HSPA9P38646 679 aaKnown RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 SLC19A1P41440 591 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 CAPZBP47756 277 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 ZNF165P49910 485 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 ITGA1P56199 1179 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 RPS15P62841 145 aaKnown RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 PLEKHN1Q494U1 663 aaPredicted RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 ARMC12Q5T9G4 340 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 TRIM72Q6ZMU5 477 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 FAM92BQ6ZTR7 304 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 CISD2Q8N5K1 135 aaKnown RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 WDR24Q96S15 920 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 KCTD15Q96SI1 283 aaPredicted RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 TUBGCP2Q9BSJ2 902 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 RMI1Q9H9A7 625 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 CBX8Q9HC52 389 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 PDE7BQ9NP56 450 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 ENTPD4Q9Y227 616 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 FARSAQ9Y285 508 aaKnown RBP16.22■□□□□ 0.19
VIM-208ENST00000497849 PCSK5Q92824 1860 aa16.22■□□□□ 0.19
VIM-208ENST00000497849 SSU72P8A0A1W2PR75 194 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 FADS2P1A8MWK0 482 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 DAPK3O43293 454 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 CALB1P05937 261 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 FOLR1P15328 257 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 CLCNKAP51800 687 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 STC1P52823 247 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 IQCB1Q15051 598 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 MON1BQ7L1V2 547 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 PHYKPLQ8IUZ5 450 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 FCRL4Q96PJ5 515 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 PEBP4Q96S96 227 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 SMAD5Q99717 465 aaKnown RBP16.21■□□□□ 0.19
VIM-208ENST00000497849 TSPY26PQ9H489 355 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 RARRES3Q9UL19 164 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 ADGRG1Q9Y653 693 aa16.21■□□□□ 0.19
VIM-208ENST00000497849 MDC1Q14676 2089 aaKnown RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 A0A0J9YYE9 177 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 EIF3CLB5ME19 914 aaKnown RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 ZNF185O15231 689 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 GRID2O43424 1007 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 NUAK1O60285 661 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 TMEM63AO94886 807 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 VIPP01282 170 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 TRBC1P01850 177 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 ZNF30P17039 623 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 PPP1CAP62136 330 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 MYL5Q02045 173 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 TUBB3Q13509 450 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 KCNAB1Q14722 419 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 CLEC16AQ2KHT3 1053 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 DNAJC24Q6P3W2 148 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 ZNF517Q6ZMY9 492 aaPredicted RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 LUZP1Q86V48 1076 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 IQCKQ8N0W5 287 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 ARFGAP1Q8N6T3 406 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 SLC41A2Q96JW4 573 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 EIF3CQ99613 913 aaKnown RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 SNRNP25Q9BV90 132 aaKnown RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 NAT10Q9H0A0 1025 aaKnown RBP16.2■□□□□ 0.18
VIM-208ENST00000497849 GANQ9H2C0 597 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 HSD3B7Q9H2F3 369 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 KLC4Q9NSK0 619 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 SEMA5BQ9P283 1151 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 EPHA6Q9UF33 1036 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 SIK3Q9Y2K2 1263 aa16.2■□□□□ 0.18
VIM-208ENST00000497849 PIKFYVEQ9Y2I7 2098 aa16.19■□□□□ 0.18
VIM-208ENST00000497849 IGHV5-51A0A0C4DH38 117 aa16.19■□□□□ 0.18
VIM-208ENST00000497849 A6NL46 340 aa16.19■□□□□ 0.18
VIM-208ENST00000497849 JAM2P57087 298 aa16.19■□□□□ 0.18
VIM-208ENST00000497849 IHHQ14623 411 aa16.19■□□□□ 0.18
VIM-208ENST00000497849 NAA30Q147X3 362 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms