RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CRLS1Q9UJA2 301 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 SLC30A1Q9Y6M5 507 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 FUCA1P04066 466 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 ZSCAN5DPP0CG00 497 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 PNLIPP16233 465 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF8P17098 575 aaPredicted RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 MSH3P20585 1137 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 PPM1FP49593 454 aaPredicted RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 TMEM115Q12893 351 aaPredicted RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 TARDBPQ13148 414 aaKnown RBP eCLIP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 POU6F1Q14863 301 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 PPP1R7Q15435 360 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 CHRNA6Q15825 494 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 CERCAMQ5T4B2 595 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 TTC27Q6P3X3 843 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 RBM44Q6ZP01 1051 aaKnown RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 ADGRG6Q86SQ4 1221 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 NRROSQ86YC3 692 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 TRAPPC5Q8IUR0 188 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 PTCD2Q8WV60 388 aaKnown RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 GRAMD1AQ96CP6 724 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 NXPE2Q96DL1 559 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 DCUN1D1Q96GG9 259 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 GFM1Q96RP9 751 aaKnown RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 OSGEPL1Q9H4B0 414 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 ASB8Q9H765 288 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 SPATS2LQ9NUQ6 558 aaKnown RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.18■□□□□ 0.18
SF3A1-209ENST00000496189 PRKAB1Q9Y478 270 aa16.18■□□□□ 0.18
SF3A1-209ENST00000496189 CFAP99D6REC4 459 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 NOBOXO60393 691 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 MTX2O75431 263 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SRP72O76094 671 aaKnown RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SUN1O94901 812 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 TPH1P17752 444 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SARNPP82979 210 aaKnown RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 TMPRSS15P98073 1019 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 CDK16Q00536 496 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 GPS1Q13098 491 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 HLTFQ14527 1009 aaKnown RBP eCLIP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 TRIP13Q15645 432 aaPredicted RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SKIDA1Q1XH10 827 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 PERM1Q5SV97 790 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 DENND5AQ6IQ26 1287 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 CRTC3Q6UUV7 619 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 PRUNE1Q86TP1 453 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 GLIS1Q8NBF1 620 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 DDHD1Q8NEL9 900 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 HEXDCQ8WVB3 486 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF592Q92610 1267 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 GATA6Q92908 595 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF514Q96K75 400 aaPredicted RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 TIMM29Q9BSF4 260 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 ZMYND15Q9H091 742 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 DDX47Q9H0S4 455 aaKnown RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 CCDC86Q9H6F5 360 aaKnown RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 EIF2B3Q9NR50 452 aaKnown RBP16.17■□□□□ 0.18
SF3A1-209ENST00000496189 KLC4Q9NSK0 619 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SMOXQ9NWM0 555 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 PCYOX1Q9UHG3 505 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 FKBPLQ9UIM3 349 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 KCNK6Q9Y257 313 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 SCN8AQ9UQD0 1980 aa16.17■□□□□ 0.18
SF3A1-209ENST00000496189 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 HEATR9A2RTY3 570 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 OR5K4A6NMS3 321 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 C1QTNF9BB2RNN3 333 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 TMX2-CTNND1H3BSU7 103 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 CHUKO15111 745 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 FANCGO15287 622 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A9O60656 530 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 SNX2O60749 519 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 KCNJ13O60928 360 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 RPLP0P05388 317 aaKnown RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 PROS1P07225 676 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 C1QTNF9P0C862 333 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF7P17097 686 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A6P19224 532 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A1P22309 533 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A4P22310 534 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A3P35503 534 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A5P35504 534 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF140P52738 457 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 NFATC2Q13469 925 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 PLA2G4EQ3MJ16 856 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 GPR33Q49SQ1 333 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 ZRANB3Q5FWF4 1079 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF648Q5T619 568 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 GPRC6AQ5T6X5 926 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 SYDE1Q6ZW31 735 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 NLRP9Q7RTR0 991 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 SNX20Q7Z614 316 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 SLC9B2Q86UD5 537 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 CCNJLQ8IV13 435 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 KLHL7Q8IXQ5 586 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 DCBLD1Q8N8Z6 715 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 Q8N9G6 341 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 OR52K1Q8NGK4 314 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 OR13C4Q8NGS5 318 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 STYXQ8WUJ0 223 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms