RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CYP2C18P33260 490 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 HTR7P34969 479 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 EIF2DP41214 584 aaKnown RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 MTHFRP42898 656 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 KCNC1P48547 511 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 CXCR3P49682 368 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SUOXP51687 545 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 DAOAP59103 153 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 LCP2Q13094 533 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SF3B4Q15427 424 aaKnown RBP eCLIP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 MEP1AQ16819 746 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 IMPG1Q17R60 797 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 GEN1Q17RS7 908 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF181Q2M3W8 571 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ADPRMQ3LIE5 342 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 TIGD2Q4W5G0 525 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 XKR7Q5GH72 579 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SYT6Q5T7P8 510 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ATAD3BQ5T9A4 648 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SULT1C3Q6IMI6 304 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ALKAL1Q6UXT8 129 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 DSG4Q86SJ6 1040 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ADCK1Q86TW2 530 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 NIM1KQ8IY84 436 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 KIAA1958Q8N8K9 716 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 PTGR2Q8N8N7 351 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 APPL2Q8NEU8 664 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ITFG1Q8TB96 612 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 SGCDQ92629 289 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 PTERQ96BW5 349 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 REXO5Q96IC2 774 aaKnown RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF300Q96RE9 604 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-230ENST00000495090 COLEC11Q9BWP8 271 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 FSD1LQ9BXM9 530 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 AMBRA1Q9C0C7 1298 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 MFSD1Q9H3U5 465 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 GORASP2Q9H8Y8 452 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 CNGB3Q9NQW8 809 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 OR12D3Q9UGF7 316 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 DSEQ9UL01 958 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 AKT3Q9Y243 479 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 NOX1Q9Y5S8 564 aa9.61□□□□□ -0.87
SYNE1-230ENST00000495090 COL4A4P53420 1690 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 EVPLQ92817 2033 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ILVBLA1L0T0 632 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CENPBD1B2RD01 187 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 IFRD1O00458 451 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 MATN3O15232 486 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 UPK1BO75841 260 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 MT-ND1P03886 318 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TSPAN8P19075 237 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 POLR2EP19388 210 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 FDXRP22570 491 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 APLP1P51693 650 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 POLR2JP52435 117 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CDKN2DP55273 166 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CDH13P55290 713 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 FOXA1P55317 472 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 OR4D2P58180 307 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CXCR4P61073 352 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 MVKQ03426 396 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 EMX1Q04741 257 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 FADDQ13158 208 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF789Q5FWF6 425 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PAGE2BQ5JRK9 111 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 GPR158Q5T848 1215 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TIGD7Q6NT04 549 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TMEM207Q6UWW9 146 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PRR23CQ6ZRP0 262 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 HFE2Q6ZVN8 426 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 P2RY8Q86VZ1 359 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SVOPQ8N4V2 548 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 DTWD1Q8N5C7 304 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ATPAF2Q8N5M1 289 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 RORBQ92753 470 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 C18orf25Q96B23 403 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF486Q96H40 463 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 MRGPRX2Q96LB1 330 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SLIRPQ9GZT3 109 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TRIT1Q9H3H1 467 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TFB2MQ9H5Q4 396 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 EPS8L2Q9H6S3 715 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SIAEQ9HAT2 523 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SPC25Q9HBM1 224 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ATP13A1Q9HD20 1204 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF277Q9NRM2 450 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 DDIT4Q9NX09 232 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SMPD4Q9NXE4 827 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF229Q9UJW7 825 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 INTS6Q9UL03 887 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 HSPE1-MOB4S4R3N1 261 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 A3GALT2U3KPV4 340 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PMF1-BGLAPU3KQ54 211 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SHROOM3Q8TF72 1996 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 LOC100130705A0A1B0GUX0 176 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 H3BMM5 538 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ARNTLO00327 626 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SOCS7O14512 581 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 GABRDO14764 452 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ASNA1O43681 348 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms