RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DOCK1Q14185 1865 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HNRNPCL2B2RXH8 293 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NR5A2O00482 541 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TRIM38O00635 465 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SERPIND1P05546 499 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C8AP07357 584 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PHC1P78364 1004 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PFKPQ01813 784 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DGCR6Q14129 220 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PLCL1Q15111 1095 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF789Q5FWF6 425 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DSELQ8IZU8 1212 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C12orf76Q8N812 135 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ACTRT2Q8TDY3 377 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DENND1AQ8TEH3 1009 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STARD8Q92502 1023 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SEPHS2Q99611 448 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCF25Q9BQ70 676 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RTP3Q9BQQ7 232 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 WDR83Q9BRX9 315 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CLPBQ9H078 707 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STN1Q9H668 368 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TLR9Q9NR96 1032 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GIMAP2Q9UG22 337 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HEMK1Q9Y5R4 338 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RGS5O15539 181 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCNT2O60583 730 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PLIN3O60664 434 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ALDOAP04075 364 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CD68P34810 354 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PSME3P61289 254 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BCL2L1Q07817 233 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MRPL28Q13084 256 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DPYSQ14117 519 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCDC85BQ15834 202 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MOGQ16653 247 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 COLGALT2Q8IYK4 626 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GATA5Q9BWX5 397 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MOV10Q9HCE1 1003 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FKBPLQ9UIM3 349 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 YIPF1Q9Y548 306 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DCLK1O15075 740 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TYROBPO43914 113 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STAU1O95793 577 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GCAP28676 217 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 IL12RB1P42701 662 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TM4SF4P48230 202 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RAB10P61026 200 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DOK6Q6PKX4 331 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RSPO2Q6UXX9 243 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HERC6Q8IVU3 1022 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RORBQ92753 470 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TMIGD2Q96BF3 282 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCF12Q99081 682 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 EPB41L1Q9H4G0 881 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 COG4Q9H9E3 785 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CATSPERZQ9NTU4 200 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SCN3BQ9NY72 215 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RAI2Q9Y5P3 530 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ATAD5Q96QE3 1844 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UNCXA6NJT0 531 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM25AB3EWG3 89 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM25CB3EWG5 89 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM25GB3EWG6 89 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RPLP2P05387 115 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF182P17025 639 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MZF1P28698 734 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MC4RP32245 332 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARHGDIAP52565 204 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ST8SIA6P61647 398 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CYP2A13Q16696 494 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SMU1Q2TAY7 513 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STXBP5Q5T5C0 1151 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RETSATQ6NUM9 610 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CYP4V2Q6ZWL3 525 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GATAD2AQ86YP4 633 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C2orf73Q8N5S3 287 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LRTOMTQ8WZ04 291 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 IRGQQ8WZA9 623 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ISOC1Q96CN7 298 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TSPAN17Q96FV3 270 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TRPV5Q9NQA5 729 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ST14Q9Y5Y6 855 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TMEM221A6NGB7 291 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TRPC5OSA6NMA1 111 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STK25O00506 426 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CD3EAPO15446 510 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 COCHO43405 550 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SEMA3DO95025 777 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RHOQP17081 205 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TYMPP19971 482 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NTHL1P78549 312 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FCHO2Q0JRZ9 810 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UGT2A3Q6UWM9 527 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HEXDCQ8WVB3 486 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NCSTNQ92542 709 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RBBP8Q99708 897 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ADGRE3Q9BY15 652 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ASPSCR1Q9BZE9 553 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C1orf21Q9H246 121 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms