RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 C1orf87Q8N0U7 546 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 C17orf53Q8N3J3 647 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 EMC1Q8N766 993 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 RBMXL3Q8N7X1 1067 aaKnown RBP4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 HJURPQ8NCD3 748 aaPredicted RBP4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 BBS10Q8TAM1 723 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 GSDMBQ8TAX9 411 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 SPATA20Q8TB22 786 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 SORCS1Q8WY21 1168 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 CD101Q93033 1021 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 FAM120BQ96EK7 910 aaKnown RBP4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 OR2A14Q96R47 310 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 SYT17Q9BSW7 474 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 EBF2Q9HAK2 575 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 LRRC4Q9HBW1 653 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 MTMR10Q9NXD2 777 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 NENFQ9UMX5 172 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 CMAHPQ9Y471 501 aa4.77□□□□□ -1.65
HMGB1P38-201ENST00000490557 B4DLN1 442 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 PRAC2D3DTV9 90 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 FAM90A26D6RGX4 464 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNF587BE7ETH6 402 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TULP2O00295 520 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 SMAD9O15198 467 aaKnown RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZBTB43O43298 467 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TMCC2O75069 709 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 WDR1O75083 606 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 LDB3O75112 727 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ITGA2P17301 1181 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 AMD1P17707 334 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 UGT1A1P22309 533 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 KCNA5P22460 613 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 HOXA13P31271 388 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 MRPL12P52815 198 aaKnown RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 CLDN20P56880 219 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 SNX16P57768 344 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 BRWD1-AS2P59051 145 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ISL1P61371 349 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 CREB5Q02930 508 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 GTF2H2Q13888 395 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 WTAPQ15007 396 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 KLHL22Q53GT1 634 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 FAM205BPQ63HN1 556 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 NSUN5P2Q63ZY6 315 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 GTF2H2CQ6P1K8 395 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 GFRALQ6UXV0 394 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNF704Q6ZNC4 412 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TMEM219Q86XT9 240 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 NRROSQ86YC3 692 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TAGAPQ8N103 731 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 NAGSQ8N159 534 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 MUC20Q8N307 709 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 IL17RCQ8NAC3 791 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 OR5R1Q8NH85 324 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 LNX1Q8TBB1 728 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TRPC4APQ8TEL6 797 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 EGLN2Q96KS0 407 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TTC14Q96N46 770 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 PCYT2Q99447 389 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 NEURL2Q9BR09 285 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 CSTL1Q9H114 145 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 LRMDAQ9H2I8 198 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 FKRPQ9H9S5 495 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 TMEM30AQ9NV96 361 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 FBXO2Q9UK22 296 aaPredicted RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 RALYQ9UKM9 306 aaKnown RBP4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 PADI3Q9ULW8 664 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 ICAM5Q9UMF0 924 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 OR2W1Q9Y3N9 320 aa4.76□□□□□ -1.65
HMGB1P38-201ENST00000490557 A0A1B0GUV1 79 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 LRRC72A6NJI9 287 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNHIT1O43257 154 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 OR2C1O95371 312 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 CETPP11597 493 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 BDNFP23560 247 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 PON1P27169 355 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 GARSP41250 739 aaKnown RBP4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 FMO5P49326 533 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNF132P52740 706 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 MFAP4P55083 255 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNF718Q3SXZ3 478 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZNF672Q499Z4 452 aaPredicted RBP4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ZDHHC20Q5W0Z9 365 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 PMS2CLQ68D20 193 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 OR7E24Q6IFN5 339 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 PLEKHM3Q6ZWE6 761 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 FASTKD5Q7L8L6 764 aaKnown RBP4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 SLC9B2Q86UD5 537 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 TSPAN33Q86UF1 283 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 PM20D2Q8IYS1 436 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 RASGEF1CQ8N431 466 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 METTL27Q8N6F8 245 aaPredicted RBP4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 TMEM255BQ8WV15 326 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 CALML4Q96GE6 196 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 GHITMQ9H3K2 345 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 RAD21L1Q9H4I0 556 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 DNAJC18Q9H819 358 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ABCF3Q9NUQ8 709 aa4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 ADD3Q9UEY8 706 aaKnown RBP4.75□□□□□ -1.65
HMGB1P38-201ENST00000490557 GPR34Q9UPC5 381 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms