RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 FKBP15Q5T1M5 1219 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 HENMT1Q5T8I9 393 aaKnown RBP8.09□□□□□ -1.11
USP39-216ENST00000490193 MARC1Q5VT66 337 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 CYB5D1Q6P9G0 228 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TMEM26Q6ZUK4 368 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PRSS42Q7Z5A4 293 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TMEM135Q86UB9 458 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TEX26Q8N6G2 289 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 AOPEPQ8N6M6 819 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 THAP4Q8WY91 577 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 KLHL6Q8WZ60 621 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 STAMBPL1Q96FJ0 436 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 FCRL4Q96PJ5 515 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PLEKHG4BQ96PX9 1271 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 OR6C1Q96RD1 312 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 LYSMD1Q96S90 227 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 SYT11Q9BT88 431 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 RIOK2Q9BVS4 552 aaKnown RBP8.09□□□□□ -1.11
USP39-216ENST00000490193 TRIM55Q9BYV6 548 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 TWSG1Q9GZX9 223 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 BRD8Q9H0E9 1235 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 CARD9Q9H257 536 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 CLSTN2Q9H4D0 955 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 ZWILCHQ9H900 591 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 SEPT11Q9NVA2 429 aaKnown RBP8.09□□□□□ -1.11
USP39-216ENST00000490193 ETNK2Q9NVF9 386 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PCSK1NQ9UHG2 260 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PADI1Q9ULC6 663 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 KCNK6Q9Y257 313 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PCDHGB7Q9Y5F8 929 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 ADGRG1Q9Y653 693 aa8.09□□□□□ -1.11
USP39-216ENST00000490193 PIPSLA2A3N6 862 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 RGSL1A5PLK6 1076 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 WIPF3A6NGB9 483 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 GPR89AB7ZAQ6 455 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 H3BRJ5 948 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 GRID2O43424 1007 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 KATNA1O75449 491 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 SPAG6O75602 509 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 DNAJB5O75953 348 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 UBXN7O94888 489 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 ASMTLO95671 621 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 CCNYL3P0C7X3 344 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 GPR89BP0CG08 455 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 ACP5P13686 325 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 PCK1P35558 622 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 SMCPP49901 116 aaPredicted RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 PGDP52209 483 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 RPL26P61254 145 aaKnown RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 SH3BP2P78314 561 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 LAMB3Q13751 1172 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 UGT8Q16880 541 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 TMCO3Q6UWJ1 677 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 MAMDC2Q7Z304 686 aaPredicted RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 POLNQ7Z5Q5 900 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 TICAM1Q8IUC6 712 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 LRRC49Q8IUZ0 686 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 PHYKPLQ8IUZ5 450 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 RASGRP3Q8IV61 690 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 ATPAF2Q8N5M1 289 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 NEK11Q8NG66 645 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 ENOX1Q8TC92 643 aaKnown RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 CT55Q8WUE5 264 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 NSMCE1Q8WV22 266 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 SMIM14Q96QK8 99 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 TDRD1Q9BXT4 1180 aaKnown RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 GPR87Q9BY21 358 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 POLR1EQ9GZS1 481 aaKnown RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 RAB33BQ9H082 229 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 ACTL8Q9H568 366 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 LHX9Q9NQ69 397 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 SEMA5BQ9P283 1151 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 RCOR3Q9P2K3 495 aaPredicted RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 EPHA6Q9UF33 1036 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 AMACRQ9UHK6 382 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 RPL26L1Q9UNX3 145 aaKnown RBP8.08□□□□□ -1.12
USP39-216ENST00000490193 PRKAB1Q9Y478 270 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 FBN2P35556 2912 aa8.08□□□□□ -1.12
USP39-216ENST00000490193 FADS2P1A8MWK0 482 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CHUKO15111 745 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 SNX2O60749 519 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CEACAM4O75871 244 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CLDN7O95471 211 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 PRLP01236 227 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 TPM2P07951 284 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CCDC172P0C7W6 258 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 FERP16591 822 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 NELFEP18615 380 aaKnown RBP8.07□□□□□ -1.12
USP39-216ENST00000490193 AMPD1P23109 780 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CES1P23141 567 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 VARSP26640 1264 aaKnown RBP8.07□□□□□ -1.12
USP39-216ENST00000490193 CASP14P31944 242 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 SERPINB6P35237 376 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 ARL4AP40617 200 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 CAPZBP47756 277 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 LEPRP48357 1165 aaKnown RBP8.07□□□□□ -1.12
USP39-216ENST00000490193 SPINT3P49223 89 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 IHHQ14623 411 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 NADK2Q4G0N4 442 aa8.07□□□□□ -1.12
USP39-216ENST00000490193 ABRAXAS1Q6UWZ7 409 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms