RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PRKD1Q15139 912 aaPredicted RBP21.29■■□□□ 1
USP40-215ENST00000484528 TEX44Q53QW1 395 aa21.29■■□□□ 1
USP40-215ENST00000484528 ANKS6Q68DC2 871 aa21.29■■□□□ 1
USP40-215ENST00000484528 ADGRG6Q86SQ4 1221 aa21.29■■□□□ 1
USP40-215ENST00000484528 SLC9B2Q86UD5 537 aa21.29■■□□□ 1
USP40-215ENST00000484528 ZSCAN1Q8NBB4 408 aa21.29■■□□□ 1
USP40-215ENST00000484528 HTR3CQ8WXA8 447 aa21.29■■□□□ 1
USP40-215ENST00000484528 GLYATL1Q969I3 302 aa21.29■■□□□ 1
USP40-215ENST00000484528 ARHGAP9Q9BRR9 750 aa21.29■■□□□ 1
USP40-215ENST00000484528 BPIFA1Q9NP55 256 aa21.29■■□□□ 1
USP40-215ENST00000484528 DNAJC16Q9Y2G8 782 aa21.29■■□□□ 1
USP40-215ENST00000484528 B8ZZF3 427 aa21.28■■□□□ 1
USP40-215ENST00000484528 J3QKU1 62 aa21.28■■□□□ 1
USP40-215ENST00000484528 CST8O60676 142 aa21.28■■□□□ 1
USP40-215ENST00000484528 NDST3O95803 873 aa21.28■■□□□ 1
USP40-215ENST00000484528 SLC2A4P14672 509 aa21.28■■□□□ 1
USP40-215ENST00000484528 NFKB1P19838 968 aa21.28■■□□□ 1
USP40-215ENST00000484528 UGT1A3P35503 534 aa21.28■■□□□ 1
USP40-215ENST00000484528 ATP1A2P50993 1020 aa21.28■■□□□ 1
USP40-215ENST00000484528 DCDC1P59894 354 aa21.28■■□□□ 1
USP40-215ENST00000484528 INSCQ1MX18 579 aa21.28■■□□□ 1
USP40-215ENST00000484528 KHDC1Q4VXA5 237 aaKnown RBP21.28■■□□□ 1
USP40-215ENST00000484528 SPOCD1Q6ZMY3 1216 aa21.28■■□□□ 1
USP40-215ENST00000484528 CNGA4Q8IV77 575 aa21.28■■□□□ 1
USP40-215ENST00000484528 TRAM1L1Q8N609 369 aa21.28■■□□□ 1
USP40-215ENST00000484528 IL22RA1Q8N6P7 574 aa21.28■■□□□ 1
USP40-215ENST00000484528 NKD1Q969G9 470 aa21.28■■□□□ 1
USP40-215ENST00000484528 HAUS1Q96CS2 278 aa21.28■■□□□ 1
USP40-215ENST00000484528 TEKT5Q96M29 485 aa21.28■■□□□ 1
USP40-215ENST00000484528 CTRCQ99895 268 aa21.28■■□□□ 1
USP40-215ENST00000484528 ANP32EQ9BTT0 268 aa21.28■■□□□ 1
USP40-215ENST00000484528 DDA1Q9BW61 102 aa21.28■■□□□ 1
USP40-215ENST00000484528 TRIM39Q9HCM9 518 aa21.28■■□□□ 1
USP40-215ENST00000484528 SCHIP1Q9P0W5 487 aaPredicted RBP21.28■■□□□ 1
USP40-215ENST00000484528 NFKBIL1Q9UBC1 381 aaPredicted RBP21.28■■□□□ 1
USP40-215ENST00000484528 CPNE7Q9UBL6 633 aa21.28■■□□□ 1
USP40-215ENST00000484528 SLC23A2Q9UGH3 650 aa21.28■■□□□ 1
USP40-215ENST00000484528 MYO18BQ8IUG5 2567 aa21.27■■□□□ 1
USP40-215ENST00000484528 KIR2DS5A0A0G2JLQ3 304 aa21.27■■□□□ 1
USP40-215ENST00000484528 A0A0G2JNG1 304 aa21.27■■□□□ 1
USP40-215ENST00000484528 AKR1B15C9JRZ8 316 aaPredicted RBP21.27■■□□□ 1
USP40-215ENST00000484528 KIR2DS3K7RE56 304 aa21.27■■□□□ 1
USP40-215ENST00000484528 FAM87AP0C7U9 286 aa21.27■■□□□ 1
USP40-215ENST00000484528 CD68P34810 354 aaPredicted RBP21.27■■□□□ 1
USP40-215ENST00000484528 ADCY2Q08462 1091 aa21.27■■□□□ 1
USP40-215ENST00000484528 NFATC3Q12968 1075 aa21.27■■□□□ 1
USP40-215ENST00000484528 KIR2DS5Q14953 304 aa21.27■■□□□ 1
USP40-215ENST00000484528 SEPT7Q16181 437 aaKnown RBP21.27■■□□□ 1
USP40-215ENST00000484528 CCDC70Q6NSX1 233 aa21.27■■□□□ 1
USP40-215ENST00000484528 BMPERQ8N8U9 685 aa21.27■■□□□ 1
USP40-215ENST00000484528 TFB1MQ8WVM0 346 aaKnown RBP21.27■■□□□ 1
USP40-215ENST00000484528 SH3KBP1Q96B97 665 aa21.27■■□□□ 1
USP40-215ENST00000484528 PLEKHG4BQ96PX9 1271 aa21.27■■□□□ 1
USP40-215ENST00000484528 RAD18Q9NS91 495 aa21.27■■□□□ 1
USP40-215ENST00000484528 PDP2Q9P2J9 529 aa21.27■■□□□ 1
USP40-215ENST00000484528 INTUQ9ULD6 942 aa21.27■■□□□ 1
USP40-215ENST00000484528 TFR2Q9UP52 801 aa21.27■■□□□ 1
USP40-215ENST00000484528 PDZK1P1A8MUH7 402 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 B4E171 279 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 ITGB2P05107 769 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 TSPAN7P41732 249 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 MARCKSL1P49006 195 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 WASHC5Q12768 1159 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 TFDP2Q14188 446 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 TCEAL1Q15170 157 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 SLC14A2Q15849 920 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 TBR1Q16650 682 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 DCAF12Q5T6F0 453 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 WDR74Q6RFH5 385 aaPredicted RBP21.26■□□□□ 0.99
USP40-215ENST00000484528 ARHGAP22Q7Z5H3 698 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 ZC3H18Q86VM9 953 aaKnown RBP21.26■□□□□ 0.99
USP40-215ENST00000484528 CACNA2D3Q8IZS8 1091 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 ASPSCR1Q9BZE9 553 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 TMPRSS11EQ9UL52 423 aa21.26■□□□□ 0.99
USP40-215ENST00000484528 OR5K4A6NMS3 321 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 CHUKO15111 745 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 PSTPIP1O43586 416 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 SLC28A2O43868 658 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 RAD1O60671 282 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 LIFP15018 202 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 ZNF7P17097 686 aaPredicted RBP21.25■□□□□ 0.99
USP40-215ENST00000484528 MAGEA1P43355 309 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 CHRNA4P43681 627 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 EPHA4P54764 986 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 WNT3AP56704 352 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 RAB15P59190 212 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 UBE2IP63279 158 aaKnown RBP21.25■□□□□ 0.99
USP40-215ENST00000484528 TBX2Q13207 712 aaPredicted RBP21.25■□□□□ 0.99
USP40-215ENST00000484528 TAZQ16635 292 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 PDPK2PQ6A1A2 396 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 KDELC1Q6UW63 502 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 LRRTM4Q86VH4 590 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 SLC25A41Q8N5S1 370 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 RNF31Q96EP0 1072 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 LDHAL6BQ9BYZ2 381 aaPredicted RBP21.25■□□□□ 0.99
USP40-215ENST00000484528 APMAPQ9HDC9 416 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 KLHL8Q9P2G9 620 aaPredicted RBP21.25■□□□□ 0.99
USP40-215ENST00000484528 FAM153AQ9UHL3 310 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 ALG6Q9Y672 507 aa21.25■□□□□ 0.99
USP40-215ENST00000484528 ASH1LQ9NR48 2969 aaKnown RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms