RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 EXD3Q8N9H8 876 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 AHCYL2Q96HN2 611 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 DDA1Q9BW61 102 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 GPR63Q9BZJ6 419 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 ZMYND15Q9H091 742 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 TRIM39Q9HCM9 518 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 PRDM8Q9NQV8 689 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 UBP1Q9NZI7 540 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC23A2Q9UGH3 650 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 B3GALT1Q9Y5Z6 326 aa18.56■□□□□ 0.56
CCDC88B-206ENST00000473405 KIR2DS5A0A0G2JLQ3 304 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 A0A0G2JNG1 304 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 PRR19A6NJB7 356 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 B4E171 279 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 GPR89AB7ZAQ6 455 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 KIR2DS3K7RE56 304 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 CST8O60676 142 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 GPR89BP0CG08 455 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TSPAN7P41732 249 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 MARCKSL1P49006 195 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 CLCNKAP51800 687 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 EPHA4P54764 986 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 UBE2IP63279 158 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TFDP2Q14188 446 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 KIR2DS5Q14953 304 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 NOMO1Q15155 1222 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 KHDC1Q4VXA5 237 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 CRTC3Q6UUV7 619 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 KDELC1Q6UW63 502 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 SPOCD1Q6ZMY3 1216 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 ARHGAP22Q7Z5H3 698 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC9B2Q86UD5 537 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 ZNF547Q8IVP9 402 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TC2NQ8N9U0 490 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 CCDC112Q8NEF3 446 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TFB1MQ8WVM0 346 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 HTR3CQ8WXA8 447 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 JPH3Q8WXH2 748 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 NKD1Q969G9 470 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 RAD18Q9NS91 495 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 KLC4Q9NSK0 619 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 SCHIP1Q9P0W5 487 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 CPNE7Q9UBL6 633 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TMPRSS11EQ9UL52 423 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 TFR2Q9UP52 801 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 PCDHB11Q9Y5F2 797 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 ALG6Q9Y672 507 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 COL12A1Q99715 3063 aa18.55■□□□□ 0.56
CCDC88B-206ENST00000473405 EFCAB7A8K855 629 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 MTX2O75431 263 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 ITGB2P05107 769 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC2A4P14672 509 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 NFKB1P19838 968 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 PLA2G4EQ3MJ16 856 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 TFDP3Q5H9I0 405 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 KAZNQ674X7 775 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 BZW1Q7L1Q6 419 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 FAM129CQ86XR2 697 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 EXTL1Q92935 676 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 PLEKHG4BQ96PX9 1271 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 OSGEPL1Q9H4B0 414 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 STN1Q9H668 368 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 SLC39A1Q9NY26 324 aa18.54■□□□□ 0.56
CCDC88B-206ENST00000473405 hCG_1818297A0A087WSY0 165 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 LOC285095A0A1B0GVY8 99 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 LILRA5A6NI73 299 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 LCA5LO95447 670 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 UGT1A3P35503 534 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 WNT3AP56704 352 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 CYP4F2P78329 520 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 SNAP47Q5SQN1 464 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 ANKS6Q68DC2 871 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 SARM1Q6SZW1 724 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 ZC3H18Q86VM9 953 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 KATNAL2Q8IYT4 538 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 TTC30BQ8N4P2 665 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 NCSTNQ92542 709 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 SH3KBP1Q96B97 665 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 OXNAD1Q96HP4 312 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 QKIQ96PU8 341 aaKnown RBP eCLIP18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 VPS35Q96QK1 796 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 TBC1D10AQ9BXI6 508 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 ASPSCR1Q9BZE9 553 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 FAM153AQ9UHL3 310 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 HECTD1Q9ULT8 2610 aa18.53■□□□□ 0.56
CCDC88B-206ENST00000473405 MN1Q10571 1320 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 OR5K4A6NMS3 321 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 A8MU76 341 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 B8ZZF3 427 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 KMOO15229 486 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 ZIC2O95409 532 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 ZNF7P17097 686 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 HMGCLP35914 325 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 MAGEA1P43355 309 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 CHRNA4P43681 627 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 MAPK9P45984 424 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 PPM1FP49593 454 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 RAB15P59190 212 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 INSCQ1MX18 579 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 ATP13A5Q4VNC0 1218 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms