RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RBBP7Q16576 425 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 USP41Q3LFD5 358 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 PAGE3Q5JUK9 113 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 SLC30A9Q6PML9 568 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 MARVELD2Q8N4S9 558 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 CD274Q9NZQ7 290 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 TRPM5Q9NZQ8 1165 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 TBC1D30Q9Y2I9 924 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 DNAH14Q0VDD8 3507 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 E5RI56 91 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 ANGPT2O15123 496 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 KATNA1O75449 491 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 TFAP2AP05549 437 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 FESP07332 822 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 COL6A1P12109 1028 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 LBPP18428 481 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 OXTRP30559 389 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 ACADVLP49748 655 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 FAM151BQ6UXP7 276 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 TMEM150AQ86TG1 271 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 METTL25Q8N6Q8 603 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 FEM1AQ9BSK4 669 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 SDR39U1Q9NRG7 319 aaPredicted RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 CREBZFQ9NS37 354 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 MTRRQ9UBK8 725 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 BCAP29Q9UHQ4 241 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 PCTPQ9UKL6 214 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 NDUFAF1Q9Y375 327 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 ASPDHA6ND91 283 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 PDLIM1O00151 329 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 PLOD2O00469 737 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 GUCA1CO95843 209 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 MT-ND1P03886 318 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 C8BP07358 591 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 PSMC3P17980 439 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 SLC6A2P23975 617 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 TUFMP49411 452 aaKnown RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 APCDD1Q8J025 514 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 ARL14EPQ8N8R7 260 aaPredicted RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 ZNF461Q8TAF7 563 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 GPATCH1Q9BRR8 931 aaKnown RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 SLC52A3Q9NQ40 469 aa18.92■□□□□ 0.62
VIM-203ENST00000469543 SPATS2LQ9NUQ6 558 aaKnown RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 TRMT6Q9UJA5 497 aaKnown RBP18.92■□□□□ 0.62
VIM-203ENST00000469543 AKAP10O43572 662 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 UGT1A1P22309 533 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 UGT1A4P22310 534 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 UGT1A3P35503 534 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 UGT1A5P35504 534 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 CREB5Q02930 508 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 ELAVL2Q12926 359 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 SAMD4BQ5PRF9 694 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 NMD3Q96D46 503 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 TRAPPC9Q96Q05 1148 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 TSEN34Q9BSV6 310 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 CNOT6Q9ULM6 557 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 GPR45Q9Y5Y3 372 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 V9GYQ6 96 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 TCRBV3S1A0A5B6 114 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 E2F3O00716 465 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 RPS17P08708 135 aaKnown RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 MBL2P11226 248 aaPredicted RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 GDF5P43026 501 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 PIK3CGP48736 1102 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 IL2P60568 153 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 TGFBIQ15582 683 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 MAP7D1Q3KQU3 841 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 GPSM1Q86YR5 675 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 LRRC58Q96CX6 371 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 KLF16Q9BXK1 252 aaPredicted RBP18.91■□□□□ 0.62
VIM-203ENST00000469543 GRIP2Q9C0E4 1043 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 POPDC3Q9HBV1 291 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 DOCK6Q96HP0 2047 aa18.91■□□□□ 0.62
VIM-203ENST00000469543 VPS26AO75436 327 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 CSKP41240 450 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ZFP36L2P47974 494 aaKnown RBP18.9■□□□□ 0.62
VIM-203ENST00000469543 HTR6P50406 440 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ERVPABLB-1P60509 514 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 RHOAP61586 193 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 LAMB3Q13751 1172 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 IKBKEQ14164 716 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 SPOUT1Q5T280 376 aaKnown RBP18.9■□□□□ 0.62
VIM-203ENST00000469543 DNAJB7Q7Z6W7 309 aaPredicted RBP18.9■□□□□ 0.62
VIM-203ENST00000469543 TTC30BQ8N4P2 665 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ADGRE3Q9BY15 652 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 LHX3Q9UBR4 397 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 VPS51Q9UID3 782 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 SAC3D1A6NKF1 404 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 SOCS2O14508 198 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 NRG2O14511 850 aaPredicted RBP18.9■□□□□ 0.62
VIM-203ENST00000469543 BNIP3LO60238 219 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 CYBBP04839 570 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 IL12AP29459 219 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 BFSP2Q13515 415 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 LETMD1Q6P1Q0 360 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 NCEH1Q6PIU2 408 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 BLOC1S3Q6QNY0 202 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 PCYOX1LQ8NBM8 494 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 IGSF21Q96ID5 467 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ZFRQ96KR1 1074 aaKnown RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms