RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 HDXQ7Z353 690 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SLC47A2Q86VL8 602 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 TMEM151BQ8IW70 566 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 MMP21Q8N119 569 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PYROXD2Q8N2H3 581 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ESX1Q8N693 406 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 EMC1Q8N766 993 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CCDC112Q8NEF3 446 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 KIAA1524Q8TCG1 905 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 UBXN4Q92575 508 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SCARF2Q96GP6 870 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 LURAP1Q96LR2 239 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 CFAP57Q96MR6 1250 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 GDAP1L1Q96MZ0 367 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SLC38A3Q99624 504 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 OSBPL1AQ9BXW6 950 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 GSDMCQ9BYG8 508 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ULBP3Q9BZM4 244 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ACTL8Q9H568 366 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 SLAMF7Q9NQ25 335 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ARMCX3Q9UH62 379 aaPredicted RBP5.24□□□□□ -1.57
PTPN4-209ENST00000469511 RCOR1Q9UKL0 485 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ENTPD4Q9Y227 616 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ATP8A1Q9Y2Q0 1164 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 PRKAB1Q9Y478 270 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 MFHAS1Q9Y4C4 1052 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 DCHS2Q6V1P9 2916 aa5.24□□□□□ -1.57
PTPN4-209ENST00000469511 ANKUB1A6NFN9 424 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PRSS44E7EML9 344 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 F5H423 210 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 F8W735 103 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 GOLGA8SH3BPF8 625 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 J3KR12 359 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZNF185O15231 689 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 LRRTM2O43300 516 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 SPAG6O75602 509 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 LRIG2O94898 1065 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ATE1O95260 518 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 NDUFA10O95299 355 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 IGSF6O95976 241 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 HOXC4P09017 264 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 MYCLP1P12525 358 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 XPAP23025 273 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 USP8P40818 1118 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZNF165P49910 485 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ITGA1P56199 1179 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PPP1CAP62136 330 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 GCNT1Q02742 428 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 CDK18Q07002 472 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ELP6Q0PNE2 266 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ILF3Q12906 894 aaKnown RBP eCLIP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 BIRC2Q13490 618 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PNOCQ13519 176 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 MAP7Q14244 749 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ACOX1Q15067 660 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZRSR2Q15696 482 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 CLPPQ16740 277 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZXDCQ2QGD7 858 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 C15orf59Q2T9L4 293 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ANO6Q4KMQ2 910 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 WIPI1Q5MNZ9 446 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PAPD7Q5XG87 772 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 AFMIDQ63HM1 303 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 DENND2CQ68D51 928 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 RWDD4Q6NW29 188 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 KRBA2Q6ZNG9 492 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ACAD11Q709F0 780 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 MARK2Q7KZI7 788 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 HSD11B1LQ7Z5J1 315 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 SFRP1Q8N474 314 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 CCDC185Q8N715 623 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZNF397Q8NF99 534 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ATL2Q8NHH9 583 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 MOCOSQ96EN8 888 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PGAP3Q96FM1 320 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PLPPR2Q96GM1 343 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 AHCYL2Q96HN2 611 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 COQ10AQ96MF6 247 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 OR6C1Q96RD1 312 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 AGAP2Q99490 1192 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 CRACR2AQ9BSW2 395 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TRIM62Q9BVG3 475 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TEX101Q9BY14 249 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ING2Q9H160 280 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TRIT1Q9H3H1 467 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 WDR26Q9H7D7 661 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 ZBTB20Q9HC78 741 aaPredicted RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 LHX9Q9NQ69 397 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TMEM248Q9NWD8 314 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TRNAU1APQ9NX07 287 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PPARGC1AQ9UBK2 798 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TBC1D29Q9UFV1 150 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 OR12D3Q9UGF7 316 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 CD84Q9UIB8 345 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 PCDHGA9Q9Y5G4 932 aaKnown RBP5.23□□□□□ -1.57
PTPN4-209ENST00000469511 SLC30A1Q9Y6M5 507 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 TACC2O95359 2948 aa5.23□□□□□ -1.57
PTPN4-209ENST00000469511 RASA4BC9J798 803 aa5.22□□□□□ -1.57
PTPN4-209ENST00000469511 PMM2O15305 246 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms