RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CTAGE4Q8IX94 777 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 MPP5Q8N3R9 675 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 SDR16C5Q8N3Y7 309 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 MMGT1Q8N4V1 131 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 EID2Q8N6I1 236 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CEP112Q8N8E3 955 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 MFSD3Q96ES6 412 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 SIGLEC10Q96LC7 697 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 CAMK1GQ96NX5 476 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 DUSP23Q9BVJ7 150 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 RAB17Q9H0T7 212 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 SLC32A1Q9H598 525 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 FAM96AQ9H5X1 160 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 TREX1Q9NSU2 369 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 NLGN3Q9NZ94 848 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 ZNHIT2Q9UHR6 403 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 ANAPC5Q9UJX4 755 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 PCOLCE2Q9UKZ9 415 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 UTP11Q9Y3A2 253 aaKnown RBP11.82□□□□□ -0.52
VPS13D-204ENST00000469054 GPSM3Q9Y4H4 160 aa11.82□□□□□ -0.52
VPS13D-204ENST00000469054 TRBV5-4A0A0C4DH59 114 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 FAM237BA0A1B0GVD1 139 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DCDC2BA2VCK2 349 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 OR51F1A6NGY5 319 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TRIM38O00635 465 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 CHUKO15111 745 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TP73O15350 636 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 YY2O15391 372 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 FFAR2O15552 330 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF500O60304 480 aaPredicted RBP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 ANXA6P08133 673 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 ALPPL2P10696 532 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 MSH3P20585 1137 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 FOXN2P32314 431 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 CDKN1CP49918 316 aaPredicted RBP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 PRAMEP78395 509 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 GTF2H3Q13889 308 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 PUM1Q14671 1186 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TCEA2Q15560 299 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DEFB133Q30KQ1 61 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DNAJC21Q5F1R6 531 aaKnown RBP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 FNBP1LQ5T0N5 605 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 C8orf74Q6P047 294 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 LVRNQ6Q4G3 990 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 AFTPHQ6ULP2 937 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 CES3Q6UWW8 571 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 MICALCLQ6ZW33 695 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TAS2R42Q7RTR8 314 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TAF8Q7Z7C8 310 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 PDIK1LQ8N165 341 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 AGGF1Q8N302 714 aaeCLIP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 NXPE1Q8N323 547 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DEFB124Q8NES8 71 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 OR6P1Q8NGX9 317 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 OR4L1Q8NH43 312 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 OR4C6Q8NH72 309 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 CCL4L1Q8NHW4 92 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 GPBAR1Q8TDU6 330 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 HEXDCQ8WVB3 486 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 SGSM3Q96HU1 749 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 TTC25Q96NG3 672 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 OR2M4Q96R27 311 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 GSDMCQ9BYG8 508 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 ZCCHC2Q9C0B9 1178 aaKnown RBP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DPH5Q9H2P9 285 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 SAMD15Q9P1V8 674 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 WHRNQ9P202 907 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 DOLKQ9UPQ8 538 aa11.81□□□□□ -0.52
VPS13D-204ENST00000469054 PCYT1BQ9Y5K3 369 aaPredicted RBP11.81□□□□□ -0.52
VPS13D-204ENST00000469054 ADAMTS9Q9P2N4 1935 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 ESPNB1AK53 854 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PRSS56P0CW18 603 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 ACRV1P26436 265 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 CTSCP53634 463 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 DRG2P55039 364 aaKnown RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 CTBSQ01459 385 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 SLC7A5Q01650 507 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 DHX9Q08211 1270 aaKnown RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 ILF3Q12906 894 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 CALCOCO2Q13137 446 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 LRP8Q14114 963 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 ANKRD20A4Q4UJ75 823 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 FASTKD1Q53R41 847 aaKnown RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PSAPL1Q6NUJ1 521 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 TMEM135Q86UB9 458 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 SERPINA9Q86WD7 417 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PIANPQ8IYJ0 282 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 RASGEF1AQ8N9B8 481 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 NOA1Q8NC60 698 aaKnown RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 SCG3Q8WXD2 468 aaKnown RBP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS13D-204ENST00000469054 DCUN1D1Q96GG9 259 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PWWP2AQ96N64 755 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 COPS8Q99627 209 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 CDC6Q99741 560 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 LRRC1Q9BTT6 524 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 ZDHHC3Q9NYG2 299 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PRKAB1Q9Y478 270 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 PLEKHM1Q9Y4G2 1056 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms