RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DNAJC16Q9Y2G8 782 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 STK38LQ9Y2H1 464 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TRPV2Q9Y5S1 764 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 KDM3AQ9Y4C1 1321 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 VWA3AA6NCI4 1184 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 BTN3A1O00481 513 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ZW10O43264 779 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PMPCBO75439 489 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PDGFBP01127 241 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 IL1AP01583 271 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 MT-ND5P03915 603 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 IVLP07476 585 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CBSLP0DN79 551 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ALADP13716 330 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CCDC130P13994 396 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 NPPBP16860 134 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CASTP20810 708 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 GKP32189 559 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CBSP35520 551 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PGM1P36871 562 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 RPS16P62249 146 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PRAMEP78395 509 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 DMPKQ09013 629 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 TRAP1Q12931 704 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 AIMP2Q13155 320 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 COTL1Q14019 142 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ANKRD20A4Q4UJ75 823 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ANKRD20A8PQ5CZ79 823 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ANKRD20A2Q5SQ80 823 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 SPATA46Q5T0L3 261 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ANKRD20A1Q5TYW2 823 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ANKRD20A3Q5VUR7 823 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM65Q6PI78 240 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 USP17L6PQ6QN14 398 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 MFSD7Q6UXD7 560 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 KIF6Q6ZMV9 814 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 MSANTD1Q6ZTZ1 278 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 LUZP1Q86V48 1076 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 GAS2L3Q86XJ1 694 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 SFTPA1Q8IWL2 248 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF679Q8IYX0 411 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ADGRF2Q8IZF7 708 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 SPARTQ8N0X7 666 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 RASGEF1CQ8N431 466 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF565Q8N9K5 539 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 C7orf57Q8NEG2 295 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 PRPF31Q8WWY3 499 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 VCPIP1Q96JH7 1222 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 IFT74Q96LB3 600 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 LLPHQ9BRT6 129 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 TRIM54Q9BYV2 358 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 RIBC2Q9H4K1 309 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 MVB12BQ9H7P6 319 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM206Q9H813 350 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 SCPEP1Q9HB40 452 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 WDR6Q9NNW5 1121 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CENPMQ9NSP4 180 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 SACM1LQ9NTJ5 587 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 GIMAP4Q9NUV9 329 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6C2Q9NZP2 312 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CNIH4Q9P003 139 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 BAIAP2L1Q9UHR4 511 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBE1Q9UJT0 475 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 DRG1Q9Y295 367 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 DERAQ9Y315 318 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 ATP6V1DQ9Y5K8 247 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 NFS1Q9Y697 457 aa4.86□□□□□ -1.63
CCDC88A-210ENST00000468534 CCDC187A0A096LP49 1063 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SERTM2A0A1B0GWG4 89 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ARHGEF37A1IGU5 675 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF879B4DU55 563 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 EIF3CLB5ME19 914 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 BTBD19C9JJ37 291 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 TULP2O00295 520 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 TTI1O43156 1089 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SULT1B1O43704 296 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 CTAG2O75638 210 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 RECQL5O94762 991 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 AKR7A3O95154 331 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 PTBP3O95758 552 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 MT-CO3P00414 261 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 CYC1P08574 325 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM191BP0C7N4 346 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 PRKAR1AP10644 381 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SAT1P21673 171 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 BSGP35613 385 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ARHGDIBP52566 201 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 UBE2HP62256 183 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 TEFQ10587 303 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 PTP4A2Q12974 167 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC13A2Q13183 592 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 GNA13Q14344 377 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 CLCA4Q14CN2 919 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 PCLAFQ15004 111 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 RPS6KA1Q15418 735 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 AANATQ16613 207 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 CCDC14Q49A88 953 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 LRRC23Q53EV4 343 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms