RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GEMP55040 296 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 WNT3AP56704 352 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CDK18Q07002 472 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 GALNT3Q14435 633 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 PRPSAP1Q14558 356 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 IRF4Q15306 451 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CYP1B1Q16678 543 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 PARP6Q2NL67 630 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 WSCD2Q2TBF2 565 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 FHL5Q5TD97 284 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 FAXCQ5TGI0 409 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 LIPIQ6XZB0 460 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 SDR16C5Q8N3Y7 309 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 C9orf43Q8TAL5 461 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 AP1M1Q9BXS5 423 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 FOXP3Q9BZS1 431 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 SLC13A1Q9BZW2 595 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF71Q9NQZ8 489 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 SMARCAL1Q9NZC9 954 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 APOBEC3BQ9UH17 382 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 AAR2Q9Y312 384 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 SPENQ96T58 3664 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 GOLGA6L10A0A0M3HER8 536 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LOC285095A0A1B0GVY8 99 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ANKRD66B4E2M5 251 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 D6RAR5 112 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LMO7DNF2Z398 122 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 HEXIM1O94992 359 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 NDST3O95803 873 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 IFNB1P01574 187 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 EPOP01588 193 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ZNF30P17039 623 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ITIH1P19827 911 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LHCGRP22888 699 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 HTR1BP28222 390 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 CASQ1P31415 396 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 PPARDQ03181 441 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 MTM1Q13496 603 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ARHGEF7Q14155 803 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 INPP5AQ14642 412 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 PTPRRQ15256 657 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 CNGA3Q16281 694 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 QPCTQ16769 361 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 PRRT3Q5FWE3 981 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ESRP1Q6NXG1 681 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 SYT10Q6XYQ8 523 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 KDELC2Q7Z4H8 507 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 TICAM1Q8IUC6 712 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 CREG2Q8IUH2 290 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 KLHDC8BQ8IXV7 354 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 PHACTR4Q8IZ21 702 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 CCDC89Q8N998 374 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 IPMKQ8NFU5 416 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 ATL2Q8NHH9 583 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 SSC4DQ8WTU2 575 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 USP7Q93009 1102 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 TMEM159Q96B96 161 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 MRGPRX2Q96LB1 330 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 C16orf45Q96MC5 204 aaPredicted RBP11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LYSMD1Q96S90 227 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 APOOQ9BUR5 198 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 MLPHQ9BV36 600 aaPredicted RBP11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 FSD1LQ9BXM9 530 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 KCTD5Q9NXV2 234 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 COQ6Q9Y2Z9 468 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LOXL2Q9Y4K0 774 aa11.83□□□□□ -0.52
SQSTM1-206ENST00000466342 LRP4O75096 1905 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 GOLGA6CA6NDK9 693 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 GOLGA6BA6NDN3 693 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 A8MX80 341 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 PSMD11O00231 422 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 PHF2O75151 1096 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 RECQL5O94762 991 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 RASGRP1O95267 797 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 METTL18O95568 372 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 ANXA6P08133 673 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 HOXC4P09017 264 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 GOLGA6DP0CG33 693 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 HLA-DPA1P20036 260 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 ETV5P41161 510 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 TNNT3P45378 269 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 KCNJ1P48048 391 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 HK3P52790 923 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 CCL7P80098 99 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 ELOCQ15369 112 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 SLC1A5Q15758 541 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 LRRC66Q68CR7 880 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 ZNF787Q6DD87 383 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 CCDC70Q6NSX1 233 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 TTC27Q6P3X3 843 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 LVRNQ6Q4G3 990 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 GSTA5Q7RTV2 222 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 TSPAN33Q86UF1 283 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 RBFAQ8N0V3 343 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 FSTL5Q8N475 847 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 GLIS1Q8NBF1 620 aa11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 SCG3Q8WXD2 468 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 MAGOHBQ96A72 148 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-206ENST00000466342 CAPZA3Q96KX2 299 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms