RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DDX47Q9H0S4 455 aaKnown RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 CDH19Q9H159 772 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 SYNDIG1Q9H7V2 258 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 SIRPGQ9P1W8 387 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 GPR34Q9UPC5 381 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 DGKBQ9Y6T7 804 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 CCDC187A0A096LP49 1063 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 C2orf81A6NN90 581 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 CCDC188H7C350 402 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 KIF2AO00139 706 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PDE2AO00408 941 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-205ENST00000465238 SUN1O94901 812 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 CRTAMO95727 393 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PRB1P04280 392 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 KELP23276 732 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 HMGCLP35914 325 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 TRIM23P36406 574 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 VPS41P49754 854 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PDX1P52945 283 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 KIAA1024LP59773 190 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 GPS1Q13098 491 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PPP1R7Q15435 360 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 TAF1AQ15573 450 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-205ENST00000465238 KLHL7Q8IXQ5 586 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 TTC30BQ8N4P2 665 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 DNAAF3Q8N9W5 541 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 BRSK1Q8TDC3 778 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 ZNF592Q92610 1267 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 RUNDC3BQ96NL0 473 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 WDR26Q9H7D7 661 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 EIF2B3Q9NR50 452 aaKnown RBP17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PHPT1Q9NRX4 125 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-205ENST00000465238 PKP3Q9Y446 797 aa17.57■□□□□ 0.4
COL7A1-205ENST00000465238 UNC13CQ8NB66 2214 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 CDRT15L2A8MXV6 281 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 TMX2-CTNND1H3BSU7 103 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 ERVH48-1M5A8F1 160 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 STX7O15400 261 aaKnown RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 HOXC4P09017 264 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 TPH1P17752 444 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 LPOP22079 712 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 TEAD1P28347 426 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 PDE1BQ01064 536 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 RHDQ02161 417 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 CDH17Q12864 832 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 TCEA2Q15560 299 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 ZDHHC20Q5W0Z9 365 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 ALS2CLQ60I27 953 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 FOXR1Q6PIV2 292 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 PELI3Q8N2H9 469 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 OR56A4Q8NGH8 313 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 OR52K1Q8NGK4 314 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 FUBP1Q96AE4 644 aaKnown RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 CCDC74AQ96AQ1 378 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 PDXPQ96GD0 296 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 LIN37Q96GY3 246 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 GFM1Q96RP9 751 aaKnown RBP17.56■□□□□ 0.4
COL7A1-205ENST00000465238 CPNE5Q9HCH3 593 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 BPIFA1Q9NP55 256 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 PCYOX1Q9UHG3 505 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 SSUH2Q9Y2M2 353 aa17.56■□□□□ 0.4
COL7A1-205ENST00000465238 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 TMEM202A6NGA9 273 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 TNFRSF10CO14798 259 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 CASC3O15234 703 aaKnown RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 BUD23O43709 281 aaKnown RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 PPFIA2O75334 1257 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 C1QL1O75973 258 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 TNFSF15O95150 251 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 ITGA2BP08514 1039 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 BPIP17213 487 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 TERF1P54274 439 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 EIF3IQ13347 325 aaKnown RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 KCTD19Q17RG1 926 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 HENMT1Q5T8I9 393 aaKnown RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 ADAMTSL4Q6UY14 1074 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 CLEC14AQ86T13 490 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 HEATR4Q86WZ0 1026 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 GPR26Q8NDV2 337 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 GPR156Q8NFN8 814 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 SNRNP27Q8WVK2 155 aaKnown RBP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 OR1E3Q8WZA6 343 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 AGAP2Q99490 1192 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 SPATA16Q9BXB7 569 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 TEX101Q9BY14 249 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL7A1-205ENST00000465238 IL17CQ9P0M4 197 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 RABGEF1Q9UJ41 708 aa17.55■□□□□ 0.4
COL7A1-205ENST00000465238 ZNF462Q96JM2 2506 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 SCN8AQ9UQD0 1980 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 D6RAR5 112 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 AP3B1O00203 1094 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 URI1O94763 535 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-205ENST00000465238 MYCLP1P12525 358 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-205ENST00000465238 DCDC1P59894 354 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 SARNPP82979 210 aaKnown RBP17.54■□□□□ 0.4
COL7A1-205ENST00000465238 CDK3Q00526 305 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 CDK16Q00536 496 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 VAC14Q08AM6 782 aa17.54■□□□□ 0.4
COL7A1-205ENST00000465238 MSLNQ13421 630 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms