RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PIGRP01833 764 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 GJB1P08034 283 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 NMBRP28336 390 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 GJA8P48165 433 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 EEFSECP57772 596 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 MOSPD2Q8NHP6 518 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 HNRNPABQ99729 332 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 TPD52L2O43399 206 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 CLP1Q92989 425 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 COPS8Q99627 209 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 AKAP7Q9P0M2 348 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 CAPN15O75808 1086 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 NR2F1P10589 423 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PSMA1P25786 263 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 RCVRNP35243 200 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 IL23RQ5VWK5 629 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 DET1Q7L5Y6 550 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PIK3C3Q8NEB9 887 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PPTC7Q8NI37 304 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 C9JVG2 144 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 SLC22A1O15245 554 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 AIREO43918 545 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 VNN1O95497 513 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 ASPAP45381 313 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 SKP1P63208 163 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 SCN1BQ07699 218 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 SPATS1Q496A3 300 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 NEK5Q6P3R8 708 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 IPCEF1Q8WWN9 437 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 TAMM41Q96BW9 452 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PDZD7Q9H5P4 517 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 KCTD5Q9NXV2 234 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 DTLQ9NZJ0 730 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PRG2P13727 222 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 RGMBQ6NW40 437 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 PPCDCQ96CD2 204 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 SMIM35A0A1B0GVV1 85 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 GSAPA4D1B5 854 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 OGNP20774 298 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 TM4SF1P30408 202 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 TGFBR2P37173 567 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 BEX3Q00994 111 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 GPR156Q8NFN8 814 aa18.87■□□□□ 0.61
CCDC88B-204ENST00000463837 CLCN2P51788 898 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 GPX6P59796 221 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 ABATP80404 500 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 MAP2K5Q13163 448 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 IL18R1Q13478 541 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 RFTN2Q52LD8 501 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TAPT1Q6NXT6 567 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 OR5K1Q8NHB7 308 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 SUSD6Q92537 303 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 ZDHHC6Q9H6R6 413 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FBXL21Q9UKT6 434 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 ST3GAL5Q9UNP4 418 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 ADAMDEC1O15204 470 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TSPAN9O75954 239 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 RHBDF2Q6PJF5 856 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 SLC34A3Q8N130 599 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TMCO6Q96DC7 493 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.86■□□□□ 0.618e-8■■■□□ 16.5
CCDC88B-204ENST00000463837 SNX7Q9UNH6 387 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CHST10O43529 356 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FOXM1Q08050 763 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 GRPEL2Q8TAA5 225 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 EMID1Q96A84 441 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FBXL18Q96ME1 805 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TPK1Q9H3S4 243 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TELO2Q9Y4R8 837 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 PCDHAC2Q9Y5I4 1007 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 DUOX1Q9NRD9 1551 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 IRF6O14896 467 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 PIP5K1BO14986 540 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FAM189A1O60320 539 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 ATP6V1G1O75348 118 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CHRNGP07510 517 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 PRPS2P11908 318 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 POLR2EP19388 210 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TNFAIP8L3Q5GJ75 292 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CXCL17Q6UXB2 119 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CPNE8Q86YQ8 564 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 TRAPPC5Q8IUR0 188 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CLHC1Q8NHS4 586 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 KLHL5Q96PQ7 755 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 CITED4Q96RK1 184 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FBXO10Q9UK96 956 aa18.86■□□□□ 0.61
CCDC88B-204ENST00000463837 FAM234BA2RU67 622 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TRBC1P01850 177 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TCF4P15884 667 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TIE1P35590 1138 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 THOP1P52888 689 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 LGALS3BPQ08380 585 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CHADLQ6NUI6 762 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 EXOC2Q96KP1 924 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CNTN3Q9P232 1028 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 FZD1Q9UP38 647 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 SMIM28A0A1B0GU29 152 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 GABRDO14764 452 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 ASLP04424 464 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms