RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF670	Q9BS34	389 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	BRD8	Q9H0E9	1235 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	FAM83D	Q9H4H8	585 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF768	Q9H5H4	540 aa	Known RBP	11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ARFGAP3	Q9NP61	516 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	KLHL3	Q9UH77	587 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	ANAPC7	Q9UJX3	599 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	CROT	Q9UKG9	612 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	TMPRSS11E	Q9UL52	423 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	KCTD3	Q9Y597	815 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	CRYBG3	Q68DQ2	2970 aa		11.01	□□□□□ -0.65
PTPN7-204	ENST00000462815	SPTAN1	Q13813	2472 aa	Known RBP	11	□□□□□ -0.65
PTPN7-204	ENST00000462815		A0A087X0T9	212 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	OR5K4	A6NMS3	321 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ANKRD66	B4E2M5	251 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TOX3	O15405	576 aa	Predicted RBP	11	□□□□□ -0.65
PTPN7-204	ENST00000462815	SNX2	O60749	519 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TIAF1	O95411	115 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	FAM228B	P0C875	321 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC2A4	P14672	509 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TCN2	P20062	427 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	MAN1A1	P33908	653 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	MAPK9	P45984	424 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	EPHB1	P54762	984 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TAS2R40	P59535	323 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	DCDC1	P59894	354 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	MC1R	Q01726	317 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ITK	Q08881	620 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZBTB17	Q13105	803 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	NR1I3	Q14994	352 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ANO6	Q4KMQ2	910 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TMEM26	Q6ZUK4	368 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	PRSS42	Q7Z5A4	293 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	C11orf96	Q7Z7L8	435 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	PLXDC1	Q8IUK5	500 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11	□□□□□ -0.65
PTPN7-204	ENST00000462815	KLHL6	Q8WZ60	621 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	RSC1A1	Q92681	617 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	NUP85	Q9BW27	656 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ULBP3	Q9BZM4	244 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZMYND15	Q9H091	742 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	OR2AG1	Q9H205	316 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	KLC4	Q9NSK0	619 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	TMEM63C	Q9P1W3	806 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	SEMA5B	Q9P283	1151 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	IP6K2	Q9UHH9	426 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	PCDHGA6	Q9Y5G7	932 aa		11	□□□□□ -0.65
PTPN7-204	ENST00000462815	LRBA	P50851	2863 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	GPR89A	B7ZAQ6	455 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	MTSS1	O43312	755 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	KIF1C	O43896	1103 aa	Known RBP	10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	UBXN7	O94888	489 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	NTRK1	P04629	796 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	GPR89B	P0CG08	455 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	FGF5	P12034	268 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	DLST	P36957	453 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	CD86	P42081	329 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	CAPZB	P47756	277 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	PPP1CA	P62136	330 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	IFI35	P80217	286 aa	Predicted RBP	10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	KLRB1	Q12918	225 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	GALNT3	Q14435	633 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	KRT81	Q14533	505 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	TCTN3	Q6NUS6	607 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	C16orf46	Q6P387	395 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	ABRAXAS1	Q6UWZ7	409 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	TMC3	Q7Z5M5	1100 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	PHYKPL	Q8IUZ5	450 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	FAM26E	Q8N5C1	309 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	PLD5	Q8N7P1	536 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	GALNT6	Q8NCL4	622 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	MLPH	Q9BV36	600 aa	Predicted RBP	10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	STN1	Q9H668	368 aa	Known RBP	10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	TRIM39	Q9HCM9	518 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	SLC40A1	Q9NP59	571 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	PKD2L2	Q9NZM6	624 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815	ITPR2	Q14571	2701 aa		10.99	□□□□□ -0.65
PTPN7-204	ENST00000462815		A0A1W2PQJ5	194 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	C3orf70	A6NLC5	250 aa	Predicted RBP	10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	KCNK1	O00180	336 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	KIAA0754	O94854	1291 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	RECK	O95980	971 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	TYRP1	P17643	537 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	CA4	P22748	312 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	PPM1F	P49593	454 aa	Predicted RBP	10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	PMS2	P54278	862 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	PPID	Q08752	370 aa	Known RBP	10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	IL11RA	Q14626	422 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	IQCB1	Q15051	598 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	PLA2G4E	Q3MJ16	856 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	ZNF569	Q5MCW4	686 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	AGAP9	Q5VTM2	703 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	PDPK2P	Q6A1A2	396 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	CRTC3	Q6UUV7	619 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	C6orf15	Q6UXA7	325 aa	Predicted RBP	10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	WASH2P	Q6VEQ5	465 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	KDELC2	Q7Z4H8	507 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	CCDC13	Q8IYE1	715 aa		10.98	□□□□□ -0.65
PTPN7-204	ENST00000462815	TRAM1L1	Q8N609	369 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms