RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 STAMQ92783 540 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TNFRSF14Q92956 283 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FOXRED1Q96CU9 486 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM41AQ96HV5 264 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 PIWIL1Q96J94 861 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM71F1Q96KD3 344 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RAD9AQ99638 391 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 NEURL2Q9BR09 285 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TINAGL1Q9GZM7 467 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 POLR1EQ9GZS1 481 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 HOXD1Q9GZZ0 328 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 KLC2Q9H0B6 622 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SEMA6BQ9H3T3 888 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 EPB41L1Q9H4G0 881 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RNF41Q9H4P4 317 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 DHX33Q9H6R0 707 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SH2D4AQ9H788 454 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC6A20Q9NP91 592 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 OBP2BQ9NPH6 170 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 LZTFL1Q9NQ48 299 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 ZFP57Q9NU63 452 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 GPRC5DQ9NZD1 345 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 OGDHLQ9ULD0 1010 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TNNQ9UQP3 1299 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 SRPRBQ9Y5M8 271 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 COL4A1P02462 1669 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 RFX7Q2KHR2 1363 aa4.79□□□□□ -1.64
CCDC88A-209ENST00000456975 TEX51A0A1B0GUA7 166 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 hCG_1809904A0A1W2PP81 198 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 A0A1W2PPE2 198 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 A0A1W2PR64 198 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 IQCF5A8MTL0 148 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LGALS16A8MUM7 142 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LINC00587B1AMM8 73 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KBTBD13C9JR72 458 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ACKR2O00590 384 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PGRMC2O15173 223 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 OIP5O43482 229 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DNAJB6O75190 326 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SPAG6O75602 509 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TOM1L1O75674 476 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 RAB3DO95716 219 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TMIGD3P0DMS9 266 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BMP3P12645 472 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ITGALP20701 1170 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CDC25AP30304 524 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GABRB2P47870 512 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ALDH9A1P49189 494 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ALDH7A1P49419 539 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 EIF2B2P49770 351 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NT5C2P49902 561 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 P2RY4P51582 365 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SPCS3P61009 180 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PMP22Q01453 160 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GLO1Q04760 184 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DYRK1AQ13627 763 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TSTQ16762 297 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CCDC142Q17RM4 750 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PCGF3Q3KNV8 242 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 EPHA10Q5JZY3 1008 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BRMS1LQ5PSV4 323 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CCNJQ5T5M9 372 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 HES5Q5TA89 166 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LCN1P1Q5VSP4 162 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT40Q6A162 431 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TTI2Q6NXR4 508 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LRRC8BQ6P9F7 803 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 STOX1Q6ZVD7 989 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TMCO2Q7Z6W1 182 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CILP2Q8IUL8 1156 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CROCCP3Q8IVE0 287 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BBS7Q8IWZ6 715 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SP8Q8IXZ3 490 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SRRM1Q8IYB3 904 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ARHGAP24Q8N264 748 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 HDDC3Q8N4P3 179 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ARFGAP2Q8N6H7 521 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ANKRD44Q8N8A2 993 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC13A3Q8WWT9 602 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ASB15Q8WXK1 588 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 RHBDF1Q96CC6 855 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 RAX2Q96IS3 184 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 VRK1Q99986 396 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SPATA16Q9BXB7 569 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 FTOQ9C0B1 505 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM168Q9H0V1 697 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NAPBQ9H115 298 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 EVA1AQ9H8M9 152 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 COPS7BQ9H9Q2 264 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDH9Q9HC56 1237 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SNX15Q9NRS6 342 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MTMR4Q9NYA4 1195 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PRSS50Q9UI38 385 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ITGA11Q9UKX5 1188 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CLCA3PQ9Y6N3 262 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 FRMPD4Q14CM0 1322 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 UBA6A0AVT1 1052 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DENND3A2RUS2 1198 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 AQP12BA6NM10 295 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms