RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ZSWIM3Q96MP5 696 aa13.55□□□□□ -0.24
CLK3-203ENST00000454830 CDRT15Q96T59 188 aa13.55□□□□□ -0.24
CLK3-203ENST00000454830 HGH1Q9BTY7 390 aa13.55□□□□□ -0.24
CLK3-203ENST00000454830 IKZF3Q9UKT9 509 aa13.55□□□□□ -0.24
CLK3-203ENST00000454830 VGLL3A8MV65 326 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 UBFD1O14562 309 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 AZIN1O14977 448 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 KERAO60938 352 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 SH3BP2P78314 561 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 CLCQ05315 142 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 FASTKQ14296 549 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 ASTLQ6HA08 431 aaPredicted RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 CLYBLQ8N0X4 340 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PPFIBP2Q8ND30 876 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PYDC1Q8WXC3 89 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 TRMOQ9BU70 441 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 CCDC28BQ9BUN5 200 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 DERL2Q9GZP9 239 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 IL26Q9NPH9 171 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 SPHK2Q9NRA0 654 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 EIF2B4Q9UI10 523 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 SLC8A2Q9UPR5 921 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 LINC01553A4QN01 128 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 KATNA1O75449 491 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 BPIP17213 487 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PTDSS1P48651 473 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 RGS4P49798 205 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 TRMT5Q32P41 509 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 MPP7Q5T2T1 576 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 RBFAQ8N0V3 343 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PCDH20Q8N6Y1 951 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 SMG7Q92540 1137 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 C19orf60Q96EN9 201 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PANX3Q96QZ0 392 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 IL1RL2Q9HB29 575 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 CDK14O94921 469 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 SPAM1P38567 509 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 NFATC2Q13469 925 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 LRRC36Q1X8D7 754 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 RFLNAQ6ZTI6 216 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 CD200R1Q8TD46 325 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 RSRC1Q96IZ7 334 aaKnown RBP13.54□□□□□ -0.24
CLK3-203ENST00000454830 ATOH8Q96SQ7 321 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 HBEGFQ99075 208 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 WASF2Q9Y6W5 498 aa13.54□□□□□ -0.24
CLK3-203ENST00000454830 PABPN1LA6NDY0 278 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 PIP5K1BO14986 540 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 FZD6O60353 706 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CHEK2O96017 543 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CHRM1P11229 460 aaPredicted RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 FOXA1P55317 472 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CARD16Q5EG05 197 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 SNX20Q7Z614 316 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 ZSWIM9Q86XI8 627 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 MYO1HQ8N1T3 1032 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 OR9I1Q8NGQ6 314 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 MRPL1Q9BYD6 325 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 EFCAB1Q9HAE3 211 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 POPDC3Q9HBV1 291 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CDH22Q9UJ99 828 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 C15orf41Q9Y2V0 281 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 MED16Q9Y2X0 877 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 COL4A6Q14031 1691 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 PSMD12O00232 456 aaPredicted RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 POP4O95707 220 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 CA3P07451 260 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CEBPBP17676 345 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 XIAPP98170 497 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CERS6Q6ZMG9 384 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CDYL2Q8N8U2 506 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 RP9Q8TA86 221 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 MAGEC3Q8TD91 643 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 TWIST2Q8WVJ9 160 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 FUBP1Q96AE4 644 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 ZFYVE19Q96K21 471 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CDK15Q96Q40 435 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 SPATA16Q9BXB7 569 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 GNPTGQ9UJJ9 305 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 A0A088AWK7 358 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 MTX2O75431 263 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 MTHFD2P13995 350 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CPOXP36551 454 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 CASP2P42575 452 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 ILF2Q12905 390 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 GRAMD4Q6IC98 578 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 C16orf89Q6UX73 402 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 NET1Q7Z628 596 aaPredicted RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 DSELQ8IZU8 1212 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 KCNJ9Q92806 393 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 RTKNQ9BST9 563 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 IGFLR1Q9H665 355 aa13.53□□□□□ -0.24
CLK3-203ENST00000454830 OAS3Q9Y6K5 1087 aaKnown RBP13.53□□□□□ -0.24
CLK3-203ENST00000454830 STX16-NPEPL1H3BU86 382 aa13.52□□□□□ -0.24
CLK3-203ENST00000454830 SOCS5O75159 536 aa13.52□□□□□ -0.24
CLK3-203ENST00000454830 VIPR2P41587 438 aa13.52□□□□□ -0.24
CLK3-203ENST00000454830 AP2B1P63010 937 aa13.52□□□□□ -0.24
CLK3-203ENST00000454830 PREPLQ4J6C6 727 aaPredicted RBP13.52□□□□□ -0.24
CLK3-203ENST00000454830 GPR65Q8IYL9 337 aa13.52□□□□□ -0.24
CLK3-203ENST00000454830 RHEBL1Q8TAI7 183 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms