RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GPR39O43194 453 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 TLX3O43711 291 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 NRDCO43847 1150 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 VEGFDO43915 354 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 SNX2O60749 519 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 PPFIA2O75334 1257 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 CDK14O94921 469 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 STIP1P31948 543 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 CACNA1BQ00975 2339 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 TMEM115Q12893 351 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 SNX1Q13596 522 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 NR1D2Q14995 579 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 OASLQ15646 514 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 C3orf38Q5JPI3 329 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 IYDQ6PHW0 289 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 CRTC3Q6UUV7 619 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 USP53Q70EK8 1073 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 TMPRSS9Q7Z410 1059 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF547Q8IVP9 402 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 TAB3Q8N5C8 712 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 OR4K2Q8NGD2 314 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 GDAP1Q8TB36 358 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF398Q8TD17 642 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC37A2Q8TED4 501 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 RTP4Q96DX8 246 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 PRR11Q96HE9 360 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 TLR10Q9BXR5 811 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 FRMD8P1Q9BZ68 369 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 FOXP3Q9BZS1 431 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 KLC4Q9NSK0 619 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 EPG5Q9HCE0 2579 aa12.58□□□□□ -0.4
PRPF40A-203ENST00000448428 WDFY3Q8IZQ1 3526 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 A6NCN8 305 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 KMOO15229 486 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 DXOO77932 396 aaKnown RBP12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 CRTAMO95727 393 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF7P17097 686 aaPredicted RBP12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 TPH1P17752 444 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 CD1CP29017 333 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 ACTN2P35609 894 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 GPR3P46089 330 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 CLCNKAP51800 687 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 INHBCP55103 352 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 ZFP36L1Q07352 338 aaKnown RBP12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 BIRC2Q13490 618 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 SIX1Q15475 284 aaPredicted RBP12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 P3H1Q32P28 736 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 TBC1D25Q3MII6 688 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 AMZ1Q400G9 498 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 LRRTM4Q86VH4 590 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 LSMEM2Q8N112 164 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 SFRP1Q8N474 314 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 TRIM58Q8NG06 486 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 FGF11Q92914 225 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 TMEM74Q96NL1 305 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 RDH14Q9HBH5 336 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 PRDM8Q9NQV8 689 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF148Q9UQR1 794 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 DMXL2Q8TDJ6 3036 aa12.57□□□□□ -0.4
PRPF40A-203ENST00000448428 CCDC187A0A096LP49 1063 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PRR19A6NJB7 356 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 TMX2-CTNND1H3BSU7 103 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PSMD3O43242 534 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 LDB2O43679 373 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 AP2A1O95782 977 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 F3P13726 295 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ETS1P14921 441 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 CCKBRP32239 447 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 EIF2S3P41091 472 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 FASLGP48023 281 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 TMPRSS15P98073 1019 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 XIAPP98170 497 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PDE1BQ01064 536 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ITGA9Q13797 1035 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 INSCQ1MX18 579 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PLA2G4EQ3MJ16 856 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 LDLRAP1Q5SW96 308 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 GPRC6AQ5T6X5 926 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 NKAIN2Q5VXU1 208 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 FOXR1Q6PIV2 292 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 C19orf48Q6RUI8 117 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF574Q6ZN55 896 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 C11orf96Q7Z7L8 435 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PRUNE1Q86TP1 453 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PIM3Q86V86 326 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF761Q86XN6 746 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 RASGEF1AQ8N9B8 481 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 DDHD1Q8NEL9 900 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 OR13C4Q8NGS5 318 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 WDR36Q8NI36 951 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 HNRNPLLQ8WVV9 542 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 LRRC45Q96CN5 670 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 LIN37Q96GY3 246 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF578Q96N58 590 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 TTC25Q96NG3 672 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC46A1Q96NT5 459 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 DCBLD2Q96PD2 775 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 SEMA6CQ9H3T2 930 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 OSGEPL1Q9H4B0 414 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms