RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 INVSQ9Y283 1065 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TEX264Q9Y6I9 313 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PAPPA2Q9BXP8 1791 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 UPK3BL1B0FP48 263 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 UPK3BL2E5RIL1 263 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 HNRNPRO43390 633 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FKBP6O75344 327 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 GJA8P48165 433 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CCR3P51677 355 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 GSCP56915 257 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 UBAP2LQ14157 1087 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 DSC3Q14574 896 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CHRNA6Q15825 494 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 MAPKAPK3Q16644 382 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 LRRC26Q2I0M4 334 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 AP5B1Q2VPB7 878 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TBCELQ5QJ74 424 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 KLHL35Q6PF15 583 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF783Q6ZMS7 281 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TLCD1Q96CP7 247 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 AARSD1Q9BTE6 412 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 MCOLN1Q9GZU1 580 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SGK2Q9HBY8 427 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SSU72Q9NP77 194 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 COLEC10Q9Y6Z7 277 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 RGSL1A5PLK6 1076 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CXorf49A8MYA2 514 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 NTRK1P04629 796 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SERPINA6P08185 405 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 COX4I1P13073 169 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CREB1P16220 341 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 VIPR1P32241 457 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CCT8P50990 548 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SLC10A2Q12908 348 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 DPYSQ14117 519 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TPRG1Q6ZUI0 275 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ALYREFQ86V81 257 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 C11orf74Q86VG3 221 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CYP4Z1Q86W10 505 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 HID1Q8IV36 788 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CYP4X1Q8N118 509 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SPPL2AQ8TCT8 520 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TRIM4Q9C037 500 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 IPPKQ9H8X2 491 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 LIMD1Q9UGP4 676 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 HEPACAM2A8MVW5 462 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 HOXB2P14652 356 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 DGKEP52429 567 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 POLE2P56282 527 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 C1QTNF8P60827 252 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ALDH6A1Q02252 535 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PDE1CQ14123 709 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ARL13AQ5H913 290 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CYP2R1Q6VVX0 501 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 DCBLD1Q8N8Z6 715 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PHOSPHO2Q8TCD6 241 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SMARCD2Q92925 531 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 AIF1LQ9BQI0 150 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 KATNBL1Q9H079 304 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TRIT1Q9H3H1 467 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 WDR55Q9H6Y2 383 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 NOL11Q9H8H0 719 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 USP29Q9HBJ7 922 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FBXL12Q9NXK8 326 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 KLHL28Q9NXS3 571 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ZDHHC3Q9NYG2 299 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 H2AFY2Q9P0M6 372 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TIMM22Q9Y584 194 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 UBXN8O00124 270 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ABLIM1O14639 778 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 NIPSNAP2O75323 286 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CYP7B1O75881 506 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 EPCAMP16422 314 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 RRM2P31350 389 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 GKP32189 559 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 NTHL1P78549 312 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CLCQ05315 142 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 FAM98BQ52LJ0 330 aaKnown RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 HLA-DQA1Q5Y7H0 255 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SCD5Q86SK9 330 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 C10orf53Q8N6V4 93 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 LINC01465Q8N7H1 131 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 RETREG1Q9H6L5 497 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 LEF1Q9UJU2 399 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 BLOC1S6Q9UL45 172 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 OGDHLQ9ULD0 1010 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF490Q9ULM2 529 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 KCTD3Q9Y597 815 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 C16orf96A6NNT2 1141 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CCNDBP1O95273 360 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 PRKAG1P54619 331 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 TRAF2Q12933 501 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF776Q68DI1 518 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 BEND5Q7L4P6 421 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 BANPQ8N9N5 519 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 MMADHCQ9H3L0 296 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 DPEP2Q9H4A9 486 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 RAD21L1Q9H4I0 556 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ELOVL2Q9NXB9 296 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SSC5DA1L4H1 1573 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms