RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 C8BP07358 591 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 PGFP49763 221 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 HMBOX1Q6NT76 420 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 TRIM74Q86UV6 250 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 TRIM73Q86UV7 250 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LRRC49Q8IUZ0 686 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 BIRC7Q96CA5 298 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 CDKN2AIPNLQ96HQ2 116 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 LRFN2Q9ULH4 789 aa11.79□□□□□ -0.52
MSH6-204ENST00000445503 NT5C1B-RDH14C9J2C7 533 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 CD1DP15813 335 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 IL7RP16871 459 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 HLA-DPA1P20036 260 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 PRDX3P30048 256 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 PMS2P3Q13401 168 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 MAPKAPK3Q16644 382 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 LRRC8DQ7L1W4 858 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 OR10A6Q8NH74 314 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 MUS81Q96NY9 551 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 TM6SF2Q9BZW4 377 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 CLPBQ9H078 707 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 TLR8Q9NR97 1041 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 SLAMF8Q9P0V8 285 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 TMEM181Q9P2C4 612 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 ADGRE2Q9UHX3 823 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 FKBPLQ9UIM3 349 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 COL11A1P12107 1806 aaPredicted RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 MLYCDO95822 493 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 ANXA6P08133 673 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 IST1P53990 364 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 PLA2G4EQ3MJ16 856 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 FGD3Q5JSP0 725 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 AARS2Q5JTZ9 985 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 PIK3R6Q5UE93 754 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 EGFLAMQ63HQ2 1017 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 LARP4Q71RC2 724 aaKnown RBP eCLIP11.78□□□□□ -0.522e-6■■□□□ 13.2
MSH6-204ENST00000445503 NKAPQ8N5F7 415 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 EPB41L1Q9H4G0 881 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 TREX1Q9NSU2 369 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 SEPT3Q9UH03 358 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 EVLQ9UI08 416 aaPredicted RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 TYW5A2RUC4 315 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 GPX3P22352 226 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 SLC6A2P23975 617 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 RAB39AQ14964 217 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 MAMDC4Q6UXC1 1216 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 FUNDC1Q8IVP5 155 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 BORCS5Q969J3 196 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 ASIC4Q96FT7 647 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 IMP4Q96G21 291 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 NAA50Q9GZZ1 169 aaKnown RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 SMURF2Q9HAU4 748 aa11.78□□□□□ -0.52
MSH6-204ENST00000445503 MAGED1Q9Y5V3 778 aaPredicted RBP11.78□□□□□ -0.52
MSH6-204ENST00000445503 THRBP10828 461 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 PKMP14618 531 aaKnown RBP11.77□□□□□ -0.52
MSH6-204ENST00000445503 ZNF37AP17032 561 aaPredicted RBP11.77□□□□□ -0.52
MSH6-204ENST00000445503 PRKACGP22612 351 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 RGS4P49798 205 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 CCT8P50990 548 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 HUNKP57058 714 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 TXNL4AP83876 142 aaKnown RBP11.77□□□□□ -0.52
MSH6-204ENST00000445503 SPIDRQ14159 915 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 PAGE3Q5JUK9 113 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 CACHD1Q5VU97 1274 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 DENND1CQ8IV53 801 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 MICU2Q8IYU8 434 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 TMEM151AQ8N4L1 468 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 OR2T12Q8NG77 320 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 IGSF8Q969P0 613 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 SLCO4A1Q96BD0 722 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 RAD21L1Q9H4I0 556 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 ACTR8Q9H981 624 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 TRNAU1APQ9NX07 287 aaKnown RBP11.77□□□□□ -0.52
MSH6-204ENST00000445503 CRLS1Q9UJA2 301 aa11.77□□□□□ -0.52
MSH6-204ENST00000445503 A0A1W2PP18 115 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TCRBV3S1A0A5B6 114 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 G3V2T6 193 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 AP1G1O43747 822 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TLR5O60602 858 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 LRATO95237 230 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 ESRRBO95718 433 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TTKP33981 857 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 HSPA7P48741 367 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 SLC11A2P49281 568 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 ACADVLP49748 655 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 EIF2B2P49770 351 aaKnown RBP11.77□□□□□ -0.53
MSH6-204ENST00000445503 ATP6V0D1P61421 351 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 SIM2Q14190 667 aaPredicted RBP11.77□□□□□ -0.53
MSH6-204ENST00000445503 MS4A13Q5J8X5 152 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 PLD3Q8IV08 490 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 CARNMT1Q8N4J0 409 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 OR13J1Q8NGT2 312 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 SMOC2Q9H3U7 446 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 OR1I1O60431 355 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 NDST3O95803 873 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 OR4D2P58180 307 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 CPSF6Q16630 551 aaKnown RBP eCLIP11.77□□□□□ -0.53
MSH6-204ENST00000445503 CCNYL2Q5T2Q4 361 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 NANOGP8Q6NSW7 305 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TMEM207Q6UWW9 146 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms