RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 DCLK1O15075 740 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 ANGPT2O15123 496 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 EOMESO95936 686 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 EFEMP2O95967 443 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SLC6A2P23975 617 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 NOS2P35228 1153 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 PLK1P53350 603 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 CBX2Q14781 532 aaPredicted RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 FAM83EQ2M2I3 478 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 PGS1Q32NB8 556 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 ZNF280DQ6N043 979 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 DEFB106AQ8N104 65 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 LEMD2Q8NC56 503 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 PTCD2Q8WV60 388 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 CCDC126Q96EE4 140 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 RPL10LQ96L21 214 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 FUNDC2Q9BWH2 189 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 MAGEE1Q9HCI5 957 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 POU2F3Q9UKI9 436 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SCN1AP35498 2009 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 GMNNO75496 209 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 RSL1D1O76021 490 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 STAU1O95793 577 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 MT-ND1P03886 318 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 CAPN3P20807 821 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SCNN1AP37088 669 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 MATKP42679 507 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 HNRNPFP52597 415 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 CDH17Q12864 832 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SELENBP1Q13228 472 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 DNASE1L3Q13609 305 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 CAMK1Q14012 370 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 POLD3Q15054 466 aaPredicted RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 INAQ16352 499 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 CLPPQ16740 277 aaPredicted RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 INAVAQ3KP66 663 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 TECRLQ5HYJ1 363 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 NOTUMQ6P988 496 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SLC27A1Q6PCB7 646 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SLC16A12Q6ZSM3 486 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 TFAP2DQ7Z6R9 452 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 LINC00523Q86TU6 105 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SPNS2Q8IVW8 549 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SPARTQ8N0X7 666 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 PAPD5Q8NDF8 572 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 SGCDQ92629 289 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 C3orf30Q96M34 536 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 TRIM8Q9BZR9 551 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 ADNPQ9H2P0 1102 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 SIAEQ9HAT2 523 aa8.51□□□□□ -1.05
HPS4-206ENST00000439453 MTCL1Q9Y4B5 1905 aaKnown RBP8.51□□□□□ -1.05
HPS4-206ENST00000439453 C9JVG2 144 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 FAM47E-STBD1D6RA91 191 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 NCK1P16333 377 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 CHRM3P20309 590 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 ADORA2BP29275 332 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 PITX1P78337 314 aaPredicted RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 SKIV2LQ15477 1246 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 SLC25A52Q3SY17 297 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 RBM48Q5RL73 367 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 PPP2R2DQ66LE6 453 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 TWF2Q6IBS0 349 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 CYP2U1Q7Z449 544 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 R3HCC1LQ7Z5L2 792 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 DSG4Q86SJ6 1040 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 IFNEQ86WN2 208 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 RNF135Q8IUD6 432 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 CNTN4Q8IWV2 1026 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 DEFB123Q8N688 67 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 PDZD8Q8NEN9 1154 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 ZFP90Q8TF47 636 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 BCL7CQ8WUZ0 217 aaPredicted RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 S100ZQ8WXG8 99 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 LRRC58Q96CX6 371 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 PHF21BQ96EK2 531 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 SLC30A3Q99726 388 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 ATP13A3Q9H7F0 1226 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 MTRRQ9UBK8 725 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 KLHL3Q9UH77 587 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 SHROOM3Q8TF72 1996 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 UBFD1O14562 309 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 MSI1O43347 362 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 CRHBPP24387 322 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 HTR1BP28222 390 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 SLC12A2P55011 1212 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 TPTEP56180 551 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 BST2Q10589 180 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 SF3B4Q15427 424 aaKnown RBP eCLIP8.5□□□□□ -1.051e-9■■■■□ 23.3
HPS4-206ENST00000439453 MAPRE1Q15691 268 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 NDUFA5Q16718 116 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 OTUD3Q5T2D3 398 aaPredicted RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 BTBD8Q5XKL5 378 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 PKN3Q6P5Z2 889 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 ALKAL1Q6UXT8 129 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 PDZD4Q76G19 769 aaPredicted RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 ITIH5Q86UX2 942 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 HOMEZQ8IX15 550 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 OSCP1Q8WVF1 389 aa8.5□□□□□ -1.05
HPS4-206ENST00000439453 NDRG1Q92597 394 aaKnown RBP8.5□□□□□ -1.05
HPS4-206ENST00000439453 C19orf60Q96EN9 201 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms